RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PTGES2Q9H7Z7 377 aa12.37□□□□□ -0.43
SHMT2-228ENST00000557302 LEF1Q9UJU2 399 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-228ENST00000557302 TINAGQ9UJW2 476 aa12.37□□□□□ -0.43
SHMT2-228ENST00000557302 ACAD8Q9UKU7 415 aa12.37□□□□□ -0.43
SHMT2-228ENST00000557302 LIPT1Q9Y234 373 aa12.37□□□□□ -0.43
SHMT2-228ENST00000557302 NDUFAF1Q9Y375 327 aa12.37□□□□□ -0.43
SHMT2-228ENST00000557302 DNAJC13O75165 2243 aa12.37□□□□□ -0.43
SHMT2-228ENST00000557302 IGLV3-32A0A0A0MS00 114 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 C15orf38-AP3S2A0A0A6YYH1 394 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 CLEC18AA5D8T8 446 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 NPIPB9F8W1W9 429 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 H3BNH8 94 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 GUSBP08236 651 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SNRPB2P08579 225 aaKnown RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 ENDOUP21128 410 aaKnown RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 DPP4P27487 766 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 CRATP43155 626 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 MVDP53602 400 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 DSCR4P56555 118 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SRSF1Q07955 248 aaKnown RBP eCLIP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 FUT5Q11128 374 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 UBAP2LQ14157 1087 aaKnown RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 GANABQ14697 944 aaKnown RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 GPR68Q15743 365 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 GPAT3Q53EU6 434 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 EIPR1Q53HC9 387 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 WIPI1Q5MNZ9 446 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 CLEC18BQ6UXF7 455 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SPATA21Q7Z572 469 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 CD163Q86VB7 1156 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 EID3Q8N140 333 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 ZNF614Q8N883 585 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 GATSQ8NAP1 163 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 CLEC18CQ8NCF0 446 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 OR2M3Q8NG83 312 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 OR14L1PQ8NHC6 308 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 RELTQ969Z4 430 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 TRNT1Q96Q11 434 aaKnown RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 NMUR2Q9GZQ4 415 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 FAM107BQ9H098 131 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SAR1AQ9NR31 198 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 POLE3Q9NRF9 147 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 TAS2R10Q9NYW0 307 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 MED11Q9P086 117 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SLAMF8Q9P0V8 285 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SPRR3Q9UBC9 169 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 TNFRSF10DQ9UBN6 386 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 ERRFI1Q9UJM3 462 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-228ENST00000557302 MKLN1Q9UL63 735 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 SLC6A5Q9Y345 797 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 WDR45Q9Y484 360 aa12.36□□□□□ -0.43
SHMT2-228ENST00000557302 GMNCA6NCL1 334 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 B4DXG7 233 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 CLIC1O00299 241 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 CCL21O00585 134 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 KIAA0513O60268 411 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 FCMRO60667 390 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 NR2F1P10589 423 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 ETFAP13804 333 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 HOXB9P17482 250 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 PPIBP23284 216 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 PER3P56645 1201 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 DSTNP60981 165 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 KLF10Q13118 480 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 CD226Q15762 336 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 ZNF630Q2M218 657 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 KLHL26Q53HC5 615 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 WLSQ5T9L3 541 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 TYW3Q6IPR3 259 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 OLIG3Q7RTU3 272 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 MTERF4Q7Z6M4 381 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 CPLX4Q7Z7G2 160 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 IFNEQ86WN2 208 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 DOLPP1Q86YN1 238 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 MSRB3Q8IXL7 192 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 ANKFN1Q8N957 763 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 OR5M9Q8NGP3 310 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 PHOSPHO1Q8TCT1 267 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 ELAC2Q9BQ52 826 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 TP63Q9H3D4 680 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 THUMPD1Q9NXG2 353 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 SLC25A37Q9NYZ2 338 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 P2RX2Q9UBL9 471 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 SUCOQ9UBS9 1254 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 MRPS18CQ9Y3D5 142 aaKnown RBP12.35□□□□□ -0.43
SHMT2-228ENST00000557302 DTNAQ9Y4J8 743 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 CAPN7Q9Y6W3 813 aa12.35□□□□□ -0.43
SHMT2-228ENST00000557302 TRBV5-3A0A0A0MS03 114 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 PRAMEF27A3QJZ7 478 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 TMEM247A6NEH6 219 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 FIGNL2A6NMB9 653 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 GTPBP1O00178 669 aaKnown RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 SLC22A2O15244 555 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 HCRTR2O43614 444 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 GMFGO60234 142 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 TNFRSF21O75509 655 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 H6PDO95479 791 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 ESRRAP11474 423 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 HK1P19367 917 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms