RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 KCNAB1Q14722 419 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 SPHARQ15513 63 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 PGGHGQ32M88 737 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 ZNF404Q494X3 552 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 SLC25A30Q5SVS4 291 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 PDZK1Q5T2W1 519 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 OR2G6Q5TZ20 316 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 NPSR1Q6W5P4 371 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 HSDL2Q6YN16 418 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 RRM2BQ7LG56 351 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 RANBP3LQ86VV4 465 aaPredicted RBP9.39□□□□□ -0.91
TMEM260-211ENST00000556648 RBM12BQ8IXT5 1001 aaKnown RBP9.39□□□□□ -0.91
TMEM260-211ENST00000556648 GJD3Q8N144 294 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 CYP4Z2PQ8N1L4 340 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 KBTBD8Q8NFY9 601 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 RNF217Q8TC41 542 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 GRHL3Q8TE85 626 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 CNOT9Q92600 299 aaKnown RBP9.39□□□□□ -0.91
TMEM260-211ENST00000556648 HOXB13Q92826 284 aaPredicted RBP9.39□□□□□ -0.91
TMEM260-211ENST00000556648 SLC38A3Q99624 504 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 C6orf62Q9GZU0 229 aaPredicted RBP9.39□□□□□ -0.91
TMEM260-211ENST00000556648 ENKD1Q9H0I2 346 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 DIMT1Q9UNQ2 313 aaKnown RBP9.39□□□□□ -0.91
TMEM260-211ENST00000556648 DOLKQ9UPQ8 538 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 B3GNT3Q9Y2A9 372 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 PCDH15Q96QU1 1955 aa9.39□□□□□ -0.91
TMEM260-211ENST00000556648 KNL1Q8NG31 2342 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 IGHV5-51A0A0C4DH38 117 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 PNMA8CA0A1B0GUJ8 204 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 TRAPPC13A5PLN9 417 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 KDM4EB2RXH2 506 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 MYL12BO14950 172 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SURF4O15260 269 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 HYAL3O43820 417 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 PFDN1O60925 122 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 NKX2-2O95096 273 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 BCKDHBP21953 392 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 NUDT1P36639 197 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 STAT5AP42229 794 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 MLLT3P42568 568 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 FASLGP48023 281 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 FNTBP49356 437 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 PSG6Q00889 435 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 ELOCQ15369 112 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 NDUFAF6Q330K2 333 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 LRIT3Q3SXY7 679 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 ZNF614Q8N883 585 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 ANKK1Q8NFD2 765 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 CHPT1Q8WUD6 406 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 S100ZQ8WXG8 99 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SPACA7Q96KW9 195 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 CNPPD1Q9BV87 410 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 MND1Q9BWT6 205 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SPRTNQ9H040 489 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 PRO3102Q9H379 93 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 EXOSC4Q9NPD3 245 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 IRAK4Q9NWZ3 460 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 FLRT3Q9NZU0 649 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 CCDC59Q9P031 241 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 YARS2Q9Y2Z4 477 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 CDH10Q9Y6N8 788 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 TP53BP1Q12888 1972 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 ZC3H12DA2A288 527 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SYNDIG1LA6NDD5 238 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SOCS6O14544 535 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 PRODHO43272 600 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 MYF5P13349 255 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 RNH1P13489 461 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 IL9P15248 144 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 CD40LGP29965 261 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 IFNA8P32881 189 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 TGM4P49221 684 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 TUBA1BP68363 451 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 RPL6Q02878 288 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SMAD2Q15796 467 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 RGS21Q2M5E4 152 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 MINDY4Q4G0A6 757 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 AADACL4Q5VUY2 407 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 LIPKQ5VXJ0 399 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 ZCCHC12Q6PEW1 402 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 B3GLCTQ6Y288 498 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 TUBA1AQ71U36 451 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 GKN2Q86XP6 184 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 OR13C2Q8NGS9 318 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 RNF31Q96EP0 1072 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 COX4I2Q96KJ9 171 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 HSPA12BQ96MM6 686 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 PTCHD1Q96NR3 888 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 DACH2Q96NX9 599 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SLC38A2Q96QD8 506 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 LMF2Q9BU23 707 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 POLR2J2Q9GZM3 115 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 NXF2Q9GZY0 626 aaKnown RBP9.38□□□□□ -0.91
TMEM260-211ENST00000556648 POLE4Q9NR33 117 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 SOHLH2Q9NX45 425 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 CSNK1G3Q9Y6M4 447 aa9.38□□□□□ -0.91
TMEM260-211ENST00000556648 TNRC18O15417 2968 aaPredicted RBP9.37□□□□□ -0.91
TMEM260-211ENST00000556648 HYKKA2RU49 373 aa9.37□□□□□ -0.91
TMEM260-211ENST00000556648 LILRA5A6NI73 299 aa9.37□□□□□ -0.91
TMEM260-211ENST00000556648 UNC119BA6NIH7 251 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms