RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DTX2Q86UW9 622 aa15.07■□□□□ 0
VPS29-204ENST00000548259 GABRG1Q8N1C3 465 aa15.07■□□□□ 0
VPS29-204ENST00000548259 ZNF619Q8N2I2 560 aa15.07■□□□□ 0
VPS29-204ENST00000548259 CEP112Q8N8E3 955 aa15.07■□□□□ 0
VPS29-204ENST00000548259 KBTBD8Q8NFY9 601 aa15.07■□□□□ 0
VPS29-204ENST00000548259 PIWIL2Q8TC59 973 aaKnown RBP15.07■□□□□ 0
VPS29-204ENST00000548259 ROBO4Q8WZ75 1007 aa15.07■□□□□ 0
VPS29-204ENST00000548259 OSTF1Q92882 214 aa15.07■□□□□ 0
VPS29-204ENST00000548259 MUCL1Q96DR8 90 aa15.07■□□□□ 0
VPS29-204ENST00000548259 RADILQ96JH8 1075 aa15.07■□□□□ 0
VPS29-204ENST00000548259 HBEGFQ99075 208 aa15.07■□□□□ 0
VPS29-204ENST00000548259 NAPGQ99747 312 aaPredicted RBP15.07■□□□□ 0
VPS29-204ENST00000548259 TRIM2Q9C040 744 aa15.07■□□□□ 0
VPS29-204ENST00000548259 L2HGDHQ9H9P8 463 aa15.07■□□□□ 0
VPS29-204ENST00000548259 GP6Q9HCN6 339 aa15.07■□□□□ 0
VPS29-204ENST00000548259 MIEF1Q9NQG6 463 aa15.07■□□□□ 0
VPS29-204ENST00000548259 FLRT3Q9NZU0 649 aa15.07■□□□□ 0
VPS29-204ENST00000548259 C7orf72A4D263 438 aa15.06■□□□□ 0
VPS29-204ENST00000548259 CCDC151A5D8V7 595 aa15.06■□□□□ 0
VPS29-204ENST00000548259 ULK1O75385 1050 aa15.06■□□□□ 0
VPS29-204ENST00000548259 THBS1P07996 1170 aa15.06■□□□□ 0
VPS29-204ENST00000548259 RPS17P08708 135 aaKnown RBP15.06■□□□□ 0
VPS29-204ENST00000548259 HPGDP15428 266 aa15.06■□□□□ 0
VPS29-204ENST00000548259 SLC25A16P16260 332 aa15.06■□□□□ 0
VPS29-204ENST00000548259 PHBP35232 272 aa15.06■□□□□ 0
VPS29-204ENST00000548259 GNG11P61952 73 aa15.06■□□□□ 0
VPS29-204ENST00000548259 VLDLRP98155 873 aa15.06■□□□□ 0
VPS29-204ENST00000548259 LOXL1Q08397 574 aaPredicted RBP15.06■□□□□ 0
VPS29-204ENST00000548259 ITGADQ13349 1161 aa15.06■□□□□ 0
VPS29-204ENST00000548259 RASA2Q15283 850 aa15.06■□□□□ 0
VPS29-204ENST00000548259 KRTAP24-1Q3LI83 254 aa15.06■□□□□ 0
VPS29-204ENST00000548259 VPS26BQ4G0F5 336 aa15.06■□□□□ 0
VPS29-204ENST00000548259 CYB5R2Q6BCY4 276 aa15.06■□□□□ 0
VPS29-204ENST00000548259 MFSD12Q6NUT3 480 aa15.06■□□□□ 0
VPS29-204ENST00000548259 CDYL2Q8N8U2 506 aa15.06■□□□□ 0
VPS29-204ENST00000548259 BANPQ8N9N5 519 aa15.06■□□□□ 0
VPS29-204ENST00000548259 ACTRT2Q8TDY3 377 aa15.06■□□□□ 0
VPS29-204ENST00000548259 C16orf78Q8WTQ4 265 aa15.06■□□□□ 0
VPS29-204ENST00000548259 CPNE4Q96A23 557 aaPredicted RBP15.06■□□□□ 0
VPS29-204ENST00000548259 ADGRG7Q96K78 797 aa15.06■□□□□ 0
VPS29-204ENST00000548259 C19orf24Q9BVV8 132 aa15.06■□□□□ 0
VPS29-204ENST00000548259 RTN4RQ9BZR6 473 aa15.06■□□□□ 0
VPS29-204ENST00000548259 RAB17Q9H0T7 212 aa15.06■□□□□ 0
VPS29-204ENST00000548259 DMGDHQ9UI17 866 aaKnown RBP15.06■□□□□ 0
VPS29-204ENST00000548259 GDF2Q9UK05 429 aaPredicted RBP15.06■□□□□ 0
VPS29-204ENST00000548259 GRID1Q9ULK0 1009 aa15.06■□□□□ 0
VPS29-204ENST00000548259 IGHV4-30-2A0A087WSY4 118 aa15.05■□□□□ -0
VPS29-204ENST00000548259 GJE1A6NN92 205 aa15.05■□□□□ -0
VPS29-204ENST00000548259 MANBAO00462 879 aa15.05■□□□□ -0
VPS29-204ENST00000548259 GPRIN2O60269 458 aa15.05■□□□□ -0
VPS29-204ENST00000548259 NDUFS7O75251 213 aa15.05■□□□□ -0
VPS29-204ENST00000548259 GCM2O75603 506 aaPredicted RBP15.05■□□□□ -0
VPS29-204ENST00000548259 JUNP05412 331 aaKnown RBP15.05■□□□□ -0
VPS29-204ENST00000548259 COL6A2P12110 1019 aa15.05■□□□□ -0
VPS29-204ENST00000548259 DDCP20711 480 aa15.05■□□□□ -0
VPS29-204ENST00000548259 HMOX2P30519 316 aa15.05■□□□□ -0
VPS29-204ENST00000548259 GABRA3P34903 492 aa15.05■□□□□ -0
VPS29-204ENST00000548259 EIF1P41567 113 aaKnown RBP15.05■□□□□ -0
VPS29-204ENST00000548259 CDH11P55287 796 aa15.05■□□□□ -0
VPS29-204ENST00000548259 CDH13P55290 713 aa15.05■□□□□ -0
VPS29-204ENST00000548259 MRPS25P82663 173 aaKnown RBP15.05■□□□□ -0
VPS29-204ENST00000548259 TMEM107Q6UX40 140 aa15.05■□□□□ -0
VPS29-204ENST00000548259 TFAP2EQ6VUC0 442 aa15.05■□□□□ -0
VPS29-204ENST00000548259 TDRPQ86YL5 185 aa15.05■□□□□ -0
VPS29-204ENST00000548259 MISPQ8IVT2 679 aa15.05■□□□□ -0
VPS29-204ENST00000548259 ZNF483Q8TF39 744 aaPredicted RBP15.05■□□□□ -0
VPS29-204ENST00000548259 SLC9A6Q92581 669 aa15.05■□□□□ -0
VPS29-204ENST00000548259 NEUROG1Q92886 237 aa15.05■□□□□ -0
VPS29-204ENST00000548259 KLHL15Q96M94 604 aa15.05■□□□□ -0
VPS29-204ENST00000548259 RNF145Q96MT1 663 aa15.05■□□□□ -0
VPS29-204ENST00000548259 MRPL57Q9BQC6 102 aaKnown RBP15.05■□□□□ -0
VPS29-204ENST00000548259 IQCGQ9H095 443 aaKnown RBP15.05■□□□□ -0
VPS29-204ENST00000548259 MRPL46Q9H2W6 279 aaKnown RBP15.05■□□□□ -0
VPS29-204ENST00000548259 GRHL1Q9NZI5 618 aa15.05■□□□□ -0
VPS29-204ENST00000548259 KLHL13Q9P2N7 655 aa15.05■□□□□ -0
VPS29-204ENST00000548259 HMX2A2RU54 273 aa15.04■□□□□ -0
VPS29-204ENST00000548259 MYO1GB0I1T2 1018 aa15.04■□□□□ -0
VPS29-204ENST00000548259 ALG1L2C9J202 215 aa15.04■□□□□ -0
VPS29-204ENST00000548259 PRKD3O94806 890 aa15.04■□□□□ -0
VPS29-204ENST00000548259 OR4F21O95013 312 aa15.04■□□□□ -0
VPS29-204ENST00000548259 ADAP00813 363 aa15.04■□□□□ -0
VPS29-204ENST00000548259 OPN1LWP04000 364 aa15.04■□□□□ -0
VPS29-204ENST00000548259 ANXA4P09525 319 aaPredicted RBP15.04■□□□□ -0
VPS29-204ENST00000548259 BMP4P12644 408 aa15.04■□□□□ -0
VPS29-204ENST00000548259 SRD5A1P18405 259 aa15.04■□□□□ -0
VPS29-204ENST00000548259 HNF1AP20823 631 aa15.04■□□□□ -0
VPS29-204ENST00000548259 TIA1P31483 386 aaKnown RBP eCLIP15.04■□□□□ -0
VPS29-204ENST00000548259 RAB35Q15286 201 aa15.04■□□□□ -0
VPS29-204ENST00000548259 TSC22D1Q15714 1073 aa15.04■□□□□ -0
VPS29-204ENST00000548259 STK11Q15831 433 aa15.04■□□□□ -0
VPS29-204ENST00000548259 ZNF239Q16600 458 aaKnown RBP15.04■□□□□ -0
VPS29-204ENST00000548259 GRAMD1BQ3KR37 738 aa15.04■□□□□ -0
VPS29-204ENST00000548259 BHLHA15Q7RTS1 189 aaPredicted RBP15.04■□□□□ -0
VPS29-204ENST00000548259 TRABD2AQ86V40 505 aa15.04■□□□□ -0
VPS29-204ENST00000548259 LILRA2Q8N149 483 aa15.04■□□□□ -0
VPS29-204ENST00000548259 PLD6Q8N2A8 252 aaKnown RBP15.04■□□□□ -0
VPS29-204ENST00000548259 OR2L13Q8N349 312 aa15.04■□□□□ -0
VPS29-204ENST00000548259 OR10H5Q8NGA6 315 aa15.04■□□□□ -0
VPS29-204ENST00000548259 CDC26Q8NHZ8 85 aa15.04■□□□□ -0
VPS29-204ENST00000548259 METTL6Q8TCB7 284 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms