RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	MED20	Q9H944	212 aa		13.78	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC13A4	Q9UKG4	626 aa		13.78	□□□□□ -0.2
DDX55-209	ENST00000542286	SNX7	Q9UNH6	387 aa		13.78	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC35F4	A4IF30	521 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	PRKN	O60260	465 aa	Predicted RBP	13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	MPZL2	O60487	215 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	CCNYL3	P0C7X3	344 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	UGT2B7	P16662	529 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	NDUFV2	P19404	249 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	SSTR4	P31391	388 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	STXBP1	P61764	594 aa	Known RBP	13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	RPS25	P62851	125 aa	Known RBP	13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	ESCO2	Q56NI9	601 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	FCRL6	Q6DN72	434 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	PAMR1	Q6UXH9	720 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	FRRS1	Q6ZNA5	592 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	NUDT18	Q6ZVK8	323 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	NRROS	Q86YC3	692 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	PHC2	Q8IXK0	858 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	UBE2J2	Q8N2K1	259 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	YIPF7	Q8N8F6	280 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	FLVCR1-AS1	Q8TAF5	88 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	ELSPBP1	Q96BH3	223 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	RNFT2	Q96EX2	444 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	ART5	Q96L15	291 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	KIR3DX1	Q9H7L2	352 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	RPL36	Q9Y3U8	105 aa	Known RBP	13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	SEC16A	O15027	2179 aa		13.77	□□□□□ -0.2
DDX55-209	ENST00000542286	MUC3A	Q02505	3323 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286		A0A0B4J293	547 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SHOX	O15266	292 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	CDRT1	O95170	752 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	TYRP1	P17643	537 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	MLLT3	P42568	568 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SCN1B	Q07699	218 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC35F1	Q5T1Q4	408 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SDE2	Q6IQ49	451 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	C19orf48	Q6RUI8	117 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SMARCD3	Q6STE5	483 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	HSDL2	Q6YN16	418 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	PLEKHM3	Q6ZWE6	761 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	OR56A1	Q8NGH5	318 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	DIO2	Q92813	273 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	FRMD6	Q96NE9	622 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	MCHR1	Q99705	422 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	BCL2L10	Q9HD36	194 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	ENOPH1	Q9UHY7	261 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	KLF15	Q9UIH9	416 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	COLEC10	Q9Y6Z7	277 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286		A0A0G2JPF8	293 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	HNRNPCL2	B2RXH8	293 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286		B4DXG7	233 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	GPR89A	B7ZAQ6	455 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	HNRNPCL3	B7ZW38	293 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	GPR89B	P0CG08	455 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	HNRNPCL4	P0DMR1	293 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	AP2S1	P53680	142 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	CDK5	Q00535	292 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC51B	Q86UW2	128 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	PLCZ1	Q86YW0	608 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	OR4M1	Q8NGD0	313 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	RPLP0P6	Q8NHW5	317 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	FAM3C	Q92520	227 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	OR2A5	Q96R48	311 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SMAD5	Q99717	465 aa	Known RBP	13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	RAB11FIP5	Q9BXF6	653 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	PITHD1	Q9GZP4	211 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SRR	Q9GZT4	340 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	DIABLO	Q9NR28	239 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	KCMF1	Q9P0J7	381 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC7A7	Q9UM01	511 aa		13.77	□□□□□ -0.21
DDX55-209	ENST00000542286	CDC123	O75794	336 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	DDX5	P17844	614 aa	Known RBP	13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	GZMK	P49863	264 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	GAS1	P54826	345 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	ALG11	Q2TAA5	492 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	ZNF791	Q3KP31	576 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	TIMM50	Q3ZCQ8	353 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	MFSD12	Q6NUT3	480 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	TMEM64	Q6YI46	380 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	WDR88	Q6ZMY6	472 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	RRM2B	Q7LG56	351 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	ZAR1	Q86SH2	424 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	VWA5B2	Q8N398	1253 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	C9orf43	Q8TAL5	461 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	TEX47	Q8TBZ9	253 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	HMGB4	Q8WW32	186 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	TBX5	Q99593	518 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	PINK1	Q9BXM7	581 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	C11orf54	Q9H0W9	315 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	RNF121	Q9H920	327 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	SLC28A3	Q9HAS3	691 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	NDOR1	Q9UHB4	597 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	KCNE5	Q9UJ90	142 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	FGF17	O60258	216 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	NCR1	O76036	304 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	ACP2	P11117	423 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	ACADM	P11310	421 aa		13.76	□□□□□ -0.21
DDX55-209	ENST00000542286	ABAT	P80404	500 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms