RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OR10Q1Q8NGQ4 319 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 OR5AK3PQ8NH89 298 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 GOT1L1Q8NHS2 421 aaPredicted RBP12.85□□□□□ -0.35
USP28-209ENST00000540925 MIPOL1Q8TD10 442 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 ZNF75CPQ92670 426 aaPredicted RBP12.85□□□□□ -0.35
USP28-209ENST00000540925 TUBA1CQ9BQE3 449 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 TBL1XR1Q9BZK7 514 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 VIPAS39Q9H9C1 493 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 KCNJ16Q9NPI9 418 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 UBQLN4Q9NRR5 601 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 CLCF1Q9UBD9 225 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 MARCOQ9UEW3 520 aaPredicted RBP12.85□□□□□ -0.35
USP28-209ENST00000540925 DKKL1Q9UK85 242 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 CAMK2AQ9UQM7 478 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 OTOGQ6ZRI0 2925 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 FAM90A27PA6NNH2 459 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 HSPB2A8KAH6 182 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 E9PBE3 544 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 HCRTR2O43614 444 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 KRT16P08779 473 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 COX6B1P14854 86 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 GCKP35557 465 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 STARP49675 285 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 CLK3P49761 638 aaKnown RBP12.84□□□□□ -0.35
USP28-209ENST00000540925 ZNF136P52737 540 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 UFM1P61960 85 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 SF3B4Q15427 424 aaKnown RBP eCLIP12.84□□□□□ -0.35
USP28-209ENST00000540925 HSPB2Q16082 182 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 SLC25A35Q3KQZ1 300 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 SLC9B1Q4ZJI4 515 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 KLHL26Q53HC5 615 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 ANXA8L1Q5VT79 327 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 AAGABQ6PD74 315 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 ENPP6Q6UWR7 440 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 RELL2Q8NC24 303 aaPredicted RBP12.84□□□□□ -0.35
USP28-209ENST00000540925 CHDHQ8NE62 594 aaPredicted RBP12.84□□□□□ -0.35
USP28-209ENST00000540925 PIWIL2Q8TC59 973 aaKnown RBP12.84□□□□□ -0.35
USP28-209ENST00000540925 ACTRT2Q8TDY3 377 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 DOCK7Q96N67 2140 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 SFXN2Q96NB2 322 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 CCDC115Q96NT0 180 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 OR7D2Q96RA2 312 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 KLHDC3Q9BQ90 382 aa12.84□□□□□ -0.35
USP28-209ENST00000540925 GOLGA8QA0A0J9YX86 632 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 RNF103-CHMP3A0A140T963 221 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 OR2M5A3KFT3 312 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 C7orf72A4D263 438 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 GOLGA8OA6NCC3 632 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 GOLGA8NF8WBI6 632 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 LINC01387J3KSC0 135 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 CFLARO15519 480 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 KITP10721 976 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 HK1P19367 917 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 PSMA4P25789 261 aaKnown RBP12.83□□□□□ -0.36
USP28-209ENST00000540925 CD226Q15762 336 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 FAM174BQ3ZCQ3 159 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 FBXL19-AS1Q494R0 122 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 SPDYE7PQ495Y7 208 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 DCST2Q5T1A1 773 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.83□□□□□ -0.36
USP28-209ENST00000540925 BHLHB9Q6PI77 547 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 ARSKQ6UWY0 536 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 C6orf120Q7Z4R8 191 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 ANKRD46Q86W74 232 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 DMRTC2Q8IXT2 367 aaPredicted RBP12.83□□□□□ -0.36
USP28-209ENST00000540925 CLEC4FQ8N1N0 589 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 C9orf106Q8NAJ2 232 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 OR5D16Q8NGK9 328 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 ADAMTS15Q8TE58 950 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 JADE3Q92613 823 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 C7orf26Q96N11 449 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 TRIB1Q96RU8 372 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 PTGES2Q9H7Z7 377 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 HHATLQ9HCP6 504 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 ZNF629Q9UEG4 869 aaPredicted RBP12.83□□□□□ -0.36
USP28-209ENST00000540925 BTNL2Q9UIR0 455 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 FAF1Q9UNN5 650 aaPredicted RBP12.83□□□□□ -0.36
USP28-209ENST00000540925 RPH3AQ9Y2J0 694 aaPredicted RBP12.83□□□□□ -0.36
USP28-209ENST00000540925 ZNF337Q9Y3M9 751 aa12.83□□□□□ -0.36
USP28-209ENST00000540925 INTS1Q8N201 2190 aaKnown RBP12.83□□□□□ -0.36
USP28-209ENST00000540925 CLCA1A8K7I4 914 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 NDUFB5O43674 189 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 C1QCP02747 245 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 GUSBP08236 651 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 SNRPB2P08579 225 aaKnown RBP12.82□□□□□ -0.36
USP28-209ENST00000540925 UQCRC2P22695 453 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 DLX5P56178 289 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 RPS26P62854 115 aaKnown RBP12.82□□□□□ -0.36
USP28-209ENST00000540925 PDCD4Q53EL6 469 aaKnown RBP12.82□□□□□ -0.36
USP28-209ENST00000540925 SAXO2Q658L1 398 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 HEPHL1Q6MZM0 1159 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 HDXQ7Z353 690 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 MISPQ8IVT2 679 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 OR4A15Q8NGL6 344 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 WNT2BQ93097 391 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 NEURL3Q96EH8 262 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 C14orf79Q96F83 325 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 OR52B2Q96RD2 323 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 SDF2Q99470 211 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 HOXD1Q9GZZ0 328 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms