RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 FOXA1P55317 472 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 RAC1P63000 192 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 TNK1Q13470 666 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 ETFDHQ16134 617 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 SPDYAQ5MJ70 313 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 ESPNLQ6ZVH7 1005 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 TRIM46Q7Z4K8 759 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 GALNT10Q86SR1 603 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 STK32CQ86UX6 486 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 ACTRT2Q8TDY3 377 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 ZBTB8AQ96BR9 441 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 ZNF764Q96H86 408 aaPredicted RBP12.13□□□□□ -0.47
SS18-204ENST00000539244 NTMQ9P121 344 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 CLEC4AQ9UMR7 237 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 VDAC3Q9Y277 283 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 ABCA1O95477 2261 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 UQCRHLA0A096LP55 91 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 EXOC1LA0A1B0GW35 172 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 H3BQF6 201 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 UBFD1O14562 309 aaKnown RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 NDUFB5O43674 189 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 RSL1D1O76021 490 aaKnown RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 SYNGR4O95473 234 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 OXSR1O95747 527 aaPredicted RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 ABHD2P08910 425 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 AGTR1P30556 359 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 RFX3P48380 749 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 NAA20P61599 178 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 RPS4XP62701 263 aaKnown RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 SLC29A2Q14542 456 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 PLPPR5Q32ZL2 321 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 GLE1Q53GS7 698 aaKnown RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 CPTPQ5TA50 214 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 HEPHL1Q6MZM0 1159 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 EXOC3L1Q86VI1 746 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 MMGT1Q8N4V1 131 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 OR2V1Q8NHB1 315 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 CDC26Q8NHZ8 85 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 FAM110BQ8TC76 370 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 ACMSDQ8TDX5 336 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 PIK3R3Q92569 461 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 AKAP1Q92667 903 aaKnown RBP eCLIP12.12□□□□□ -0.47
SS18-204ENST00000539244 METTL2AQ96IZ6 378 aaKnown RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 NPAS1Q99742 590 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 MID1IP1Q9NPA3 183 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 POLR3HQ9Y535 204 aaPredicted RBP12.12□□□□□ -0.47
SS18-204ENST00000539244 FREM1Q5H8C1 2179 aa12.12□□□□□ -0.47
SS18-204ENST00000539244 CR1P17927 2039 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 A0A0J9YW62 118 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 A0A1W2PRB8 838 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 NPIPB8E9PQR5 432 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 CXCL13O43927 109 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 GMFGO60234 142 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 GCM2O75603 506 aaPredicted RBP12.11□□□□□ -0.47
SS18-204ENST00000539244 TUBBP07437 444 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 THBS1P07996 1170 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 GSTA1P08263 222 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 DANCRP0C864 163 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 PRPS2P11908 318 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 LCN1P31025 176 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 ZNF844Q08AG5 666 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 KIAA0040Q15053 153 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 IMPG1Q17R60 797 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 CLEC12BQ2HXU8 276 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 VPS26BQ4G0F5 336 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 GTF2IRD2BQ6EKJ0 949 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 PPP4R4Q6NUP7 873 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 MFSD12Q6NUT3 480 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 NOXRED1Q6NXP6 359 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 DNAJC14Q6Y2X3 702 aaPredicted RBP12.11□□□□□ -0.47
SS18-204ENST00000539244 GTF2IRD2Q86UP8 949 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 WFDC8Q8IUA0 241 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 MISPQ8IVT2 679 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 CDRT4Q8N9R6 151 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 STEAP2Q8NFT2 490 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 OR4C3Q8NH37 302 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 LILRB1Q8NHL6 650 aaPredicted RBP12.11□□□□□ -0.47
SS18-204ENST00000539244 GPR151Q8TDV0 419 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 SLC9A6Q92581 669 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 GIMAP5Q96F15 307 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 HDHD5Q9BXW7 423 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 MED17Q9NVC6 651 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 LAMP3Q9UQV4 416 aa12.11□□□□□ -0.47
SS18-204ENST00000539244 CUBNO60494 3623 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 A0A1W2PQD3 144 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 TNFSF11O14788 317 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 TBX19O60806 448 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 PABPC4LP0CB38 370 aaKnown RBP12.1□□□□□ -0.47
SS18-204ENST00000539244 PRPH2P23942 346 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 FRKP42685 505 aaPredicted RBP12.1□□□□□ -0.47
SS18-204ENST00000539244 SLC18A2Q05940 514 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 DMTNQ08495 405 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 EXOSC6Q5RKV6 272 aaKnown RBP12.1□□□□□ -0.47
SS18-204ENST00000539244 PDSS1Q5T2R2 415 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 HBMQ6B0K9 141 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 ZNF551Q7Z340 670 aaPredicted RBP12.1□□□□□ -0.47
SS18-204ENST00000539244 TRABD2AQ86V40 505 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 CNPY4Q8N129 248 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 GABRG1Q8N1C3 465 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms