RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 SIGLEC10Q96LC7 697 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 NAP1L3Q99457 506 aaPredicted RBP7.24□□□□□ -1.25
CD44-232ENST00000531118 TRMOQ9BU70 441 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 DDX31Q9H8H2 851 aaKnown RBP7.24□□□□□ -1.25
CD44-232ENST00000531118 MYOZ1Q9NP98 299 aaPredicted RBP7.24□□□□□ -1.25
CD44-232ENST00000531118 PAQR5Q9NXK6 330 aaPredicted RBP7.24□□□□□ -1.25
CD44-232ENST00000531118 MED11Q9P086 117 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 KLHL13Q9P2N7 655 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 PRODH2Q9UF12 536 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 VWA7Q9Y334 891 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 WNK2Q9Y3S1 2297 aa7.24□□□□□ -1.25
CD44-232ENST00000531118 LOC390937A0A1W2PQ73 354 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 CCNT2O60583 730 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 GBAP04062 536 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 ATP1B1P05026 303 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 PORP16435 677 aaPredicted RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 COX5AP20674 150 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 DRD5P21918 477 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 VAMP1P23763 118 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 APEX1P27695 318 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 EMDP50402 254 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 XKP51811 444 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 DVL1P1P54792 670 aaPredicted RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 CDH15P55291 814 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 CORO7P57737 925 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 GPX6P59796 221 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 MRPS35P82673 323 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 DUSP2Q05923 314 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 MAP4K2Q12851 820 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 SCGB2A2Q13296 93 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 LTB4RQ15722 352 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 ZNF239Q16600 458 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 NKAPLQ5M9Q1 402 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 TMEM201Q5SNT2 666 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 TMEM108Q6UXF1 575 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 USP43Q70EL4 1123 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 RNF10Q8N5U6 811 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 PDPRQ8NCN5 879 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 OR2W6PQ8NHA6 318 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 OR2V1Q8NHB1 315 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 STK35Q8TDR2 534 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 MRPL24Q96A35 216 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 FOXN4Q96NZ1 517 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 MTERF1Q99551 399 aaKnown RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 PTGES2Q9H7Z7 377 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 MGAT4BQ9UQ53 548 aa7.23□□□□□ -1.25
CD44-232ENST00000531118 GPR55Q9Y2T6 319 aaPredicted RBP7.23□□□□□ -1.25
CD44-232ENST00000531118 FAM95CA0A1B0GW59 222 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 GOLGA6L10A6NI86 522 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 ZNF814B7Z6K7 855 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 TNFSF11O14788 317 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 BANF1O75531 89 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 CT45A8P0DMV1 189 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 CT45A9P0DMV2 189 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 PIK3CBP42338 1070 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 CHN2P52757 468 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 PNLIPRP2P54317 469 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 PSPHP78330 225 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 PHEXP78562 749 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 CHRNB3Q05901 458 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 ACAP2Q15057 778 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 GLYR1Q49A26 553 aaPredicted RBP7.22□□□□□ -1.25
CD44-232ENST00000531118 TRMT12Q53H54 448 aaKnown RBP7.22□□□□□ -1.25
CD44-232ENST00000531118 CT45A2Q5DJT8 189 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 SPANXN3Q5MJ09 141 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 TIMM23BQ5SRD1 257 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 SULT1C3Q6IMI6 304 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 Q6ZT83 130 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 SSX8Q7RTT4 187 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 TBC1D1Q86TI0 1168 aaPredicted RBP7.22□□□□□ -1.25
CD44-232ENST00000531118 TUSC5Q8IXB3 177 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 TXLNBQ8N3L3 684 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 CEP112Q8N8E3 955 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 UHMK1Q8TAS1 419 aaKnown RBP7.22□□□□□ -1.25
CD44-232ENST00000531118 EXT2Q93063 718 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 MUCL1Q96DR8 90 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 VSTM2LQ96N03 204 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 JMJD8Q96S16 334 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 RTN4RQ9BZR6 473 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 SAYSD1Q9NPB0 183 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 FLRT3Q9NZU0 649 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 PCDHB10Q9UN67 800 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 ABCG2Q9UNQ0 655 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 VDAC3Q9Y277 283 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 ZKSCAN5Q9Y2L8 839 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 PMF1-BGLAPU3KQ54 211 aa7.22□□□□□ -1.25
CD44-232ENST00000531118 A0A0J9YW62 118 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 ADAMDEC1O15204 470 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 FADS1O60427 444 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 NME6O75414 186 aaPredicted RBP7.21□□□□□ -1.26
CD44-232ENST00000531118 ERAL1O75616 437 aaKnown RBP7.21□□□□□ -1.26
CD44-232ENST00000531118 TTC4O95801 387 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 KRT14P02533 472 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 TACSTD2P09758 323 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 PTAFRP25105 342 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 CD40P25942 277 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 FEN1P39748 380 aaKnown RBP7.21□□□□□ -1.26
CD44-232ENST00000531118 ZNF83P51522 516 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 TAS2R39P59534 338 aa7.21□□□□□ -1.26
CD44-232ENST00000531118 PHC1P78364 1004 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms