RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CIDECQ96AQ7 238 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 GIMAP5Q96F15 307 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 ZC3HAV1LQ96H79 300 aaKnown RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 GMPPAQ96IJ6 420 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 ADGRG7Q96K78 797 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 FCRL1Q96LA6 429 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 Q96MF0 132 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 CCT7Q99832 543 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 IQCGQ9H095 443 aaKnown RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 PLSCR4Q9NRQ2 329 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 PAQR5Q9NXK6 330 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 STOML1Q9UBI4 398 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 MID2Q9UJV3 735 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 VDAC3Q9Y277 283 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 EMC9Q9Y3B6 208 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 H7C1Q1 480 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 COPEO14579 308 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 EIF1AYO14602 144 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 ADAMDEC1O15204 470 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 NDUFB5O43674 189 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 GMFGO60234 142 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 TBX19O60806 448 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 SEC22BO75396 215 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 LY6G6DO95868 133 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 SHBGP04278 402 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 THBDP07204 575 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 PSMA4P25789 261 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 EIF1AXP47813 144 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 CCT5P48643 541 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 IFFO1Q0D2I5 559 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 PDE7AQ13946 482 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 PLPPR5Q32ZL2 321 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ANKRD34AQ69YU3 496 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 CLEC6AQ6EIG7 209 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ANKRD26P1Q6NSI1 321 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 STAC2Q6ZMT1 411 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 RNF165Q6ZSG1 346 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 YTHDF3Q7Z739 585 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 EXOC3L1Q86VI1 746 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 WDR75Q8IWA0 830 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 OR10D3Q8NH80 312 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 CEP70Q8NHQ1 597 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ZFP28Q8NHY6 868 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 FAM110BQ8TC76 370 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ACTRT2Q8TDY3 377 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 EPS8L3Q8TE67 593 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 SLC9A6Q92581 669 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ZBTB8AQ96BR9 441 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ZBED6CLQ96FA7 236 aaPredicted RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 PERPQ96FX8 193 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 MS4A4EQ96PG1 132 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 NPAS1Q99742 590 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 BDH2Q9BUT1 245 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 GSX2Q9BZM3 304 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 KLHL4Q9C0H6 718 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 LRTM1Q9HBL6 345 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 OXSMQ9NWU1 459 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 C1orf109Q9NX04 203 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 MCTS1Q9ULC4 181 aaKnown RBP10.17□□□□□ -0.78
VPS28-214ENST00000531032 PTGDR2Q9Y5Y4 395 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 HEATR5AQ86XA9 2040 aa10.17□□□□□ -0.78
VPS28-214ENST00000531032 ZANQ9Y493 2812 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.16□□□□□ -0.78
VPS28-214ENST00000531032 A0A1W2PRB8 838 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 TLDC2A0PJX2 215 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 SLC28A1O00337 649 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 KLF4O43474 513 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 RGS14O43566 566 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 KCNK2O95069 426 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 PLGP00747 810 aaPredicted RBP10.16□□□□□ -0.78
VPS28-214ENST00000531032 ACP2P11117 423 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 NEFHP12036 1026 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 CPA3P15088 417 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 PAX1P15863 534 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 SDC1P18827 310 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 LCN1P31025 176 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 CRHR1P34998 444 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 GPC1P35052 558 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 CTBP2P56545 445 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 RAC1P63000 192 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 SLC18A2Q05940 514 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 EXOC3L2Q2M3D2 409 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 ZNF385BQ569K4 471 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 BEX5Q5H9J7 111 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 EXOSC6Q5RKV6 272 aaKnown RBP10.16□□□□□ -0.78
VPS28-214ENST00000531032 LIPMQ5VYY2 423 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 MFSD12Q6NUT3 480 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 Q6ZSR9 355 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 ESPNLQ6ZVH7 1005 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 ZAR1Q86SH2 424 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 GALNT10Q86SR1 603 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 TDRPQ86YL5 185 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 MISPQ8IVT2 679 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 SLC16A11Q8NCK7 471 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 NUP43Q8NFH3 380 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 OR6Y1Q8NGX8 325 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 OR2T11Q8NH01 316 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 PPCDCQ96CD2 204 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 PRRG4Q9BZD6 226 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 REEP4Q9H6H4 257 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms