RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SH2D2AQ9NP31 389 aa14.04□□□□□ -0.16
LSM1-203ENST00000520755 POLE3Q9NRF9 147 aa14.04□□□□□ -0.16
LSM1-203ENST00000520755 RYDENQ9NUL5 291 aaKnown RBP14.04□□□□□ -0.16
LSM1-203ENST00000520755 ANAPC2Q9UJX6 822 aa14.04□□□□□ -0.16
LSM1-203ENST00000520755 KLF13Q9Y2Y9 288 aaPredicted RBP14.04□□□□□ -0.16
LSM1-203ENST00000520755 GPC6Q9Y625 555 aaPredicted RBP14.04□□□□□ -0.16
LSM1-203ENST00000520755 ZFYVE26Q68DK2 2539 aa14.04□□□□□ -0.16
LSM1-203ENST00000520755 C5orf58C9J3I9 102 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 UGT2B17O75795 530 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 UTS2O95399 124 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 OPN1SWP03999 348 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 P04436 131 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 DCTP40126 519 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 TRIM25Q14258 630 aaKnown RBP14.03□□□□□ -0.16
LSM1-203ENST00000520755 GPR68Q15743 365 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 FLYWCH1Q4VC44 716 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 PRAMEF20Q5VT98 475 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 SLC22A10Q63ZE4 541 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 NUP54Q7Z3B4 507 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 COMTD1Q86VU5 262 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 SLC30A8Q8IWU4 369 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 OR4C3Q8NH37 302 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 PAQR8Q8TEZ7 354 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 FIG4Q92562 907 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 ASB9Q96DX5 294 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 NODALQ96S42 347 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 G6PC3Q9BUM1 346 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 RTN4RQ9BZR6 473 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 MMADHCQ9H3L0 296 aaPredicted RBP14.03□□□□□ -0.16
LSM1-203ENST00000520755 SACM1LQ9NTJ5 587 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 CALML5Q9NZT1 146 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 MAGEL2Q9UJ55 1249 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 MRTO4Q9UKD2 239 aaKnown RBP14.03□□□□□ -0.16
LSM1-203ENST00000520755 POMPQ9Y244 141 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 HRH3Q9Y5N1 445 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 SNX13Q9Y5W8 968 aa14.03□□□□□ -0.16
LSM1-203ENST00000520755 CHCHD2Q9Y6H1 151 aaPredicted RBP14.03□□□□□ -0.16
LSM1-203ENST00000520755 TLN1Q9Y490 2541 aaKnown RBP14.03□□□□□ -0.16
LSM1-203ENST00000520755 A0A0G2JMM0 328 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 A0A0G2JPF8 293 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 A0A1W2PPB8 328 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 A0A1W2PRS3 328 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 TMEM247A6NEH6 219 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 TTLL8A6PVC2 850 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 KIR3DP1A8MWS1 328 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 HNRNPCL2B2RXH8 293 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 HNRNPCL3B7ZW38 293 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 PEX1O43933 1283 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 ABCB7O75027 752 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 C1QL1O75973 258 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 OXSR1O95747 527 aaPredicted RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 HNRNPCL4P0DMR1 293 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 ETS2P15036 469 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 NQO1P15559 274 aaKnown RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 ATP6V1C1P21283 382 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 PTGDSP41222 190 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 MEOX1P50221 254 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 RNF144AP50876 292 aaPredicted RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 RPP38P78345 283 aaKnown RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 PMP22Q01453 160 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 DMTNQ08495 405 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 EFR3AQ14156 821 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 GNA13Q14344 377 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 BICRALQ6AI39 1079 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 GLYATQ6IB77 296 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 LCN8Q6JVE9 175 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 APOOLQ6UXV4 268 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 SULF2Q8IWU5 870 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 ZNF843Q8N446 348 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 FAM98AQ8NCA5 519 aaKnown RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 SPPL2AQ8TCT8 520 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 TMCO6Q96DC7 493 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 DEPPQ9NTK1 212 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 CNIH4Q9P003 139 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 CNOT11Q9UKZ1 510 aaKnown RBP14.02□□□□□ -0.17
LSM1-203ENST00000520755 CHST2Q9Y4C5 530 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 PCDHGB6Q9Y5F9 930 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 FAM208BQ5VWN6 2430 aa14.02□□□□□ -0.17
LSM1-203ENST00000520755 SPENQ96T58 3664 aaKnown RBP14.01□□□□□ -0.17
LSM1-203ENST00000520755 AGAP5A6NIR3 686 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 CLDN24A6NM45 220 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 C17orf51A8MQB3 221 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 KLRC4-KLRK1H3BQV0 150 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 GSTA4O15217 222 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 HS6ST1O60243 411 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 FADS1O60427 444 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 BCAS1O75363 584 aaPredicted RBP14.01□□□□□ -0.17
LSM1-203ENST00000520755 MFN2O95140 757 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 RASAL1O95294 804 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 EPPINO95925 133 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 NGFRP08138 427 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 FREM3P0C091 2139 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 CD247P20963 164 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 LCN1P31025 176 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 KDELR2P33947 212 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 DNASE1L1P49184 302 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 ATP12AP54707 1039 aa14.01□□□□□ -0.17
LSM1-203ENST00000520755 PSMD4P55036 377 aaKnown RBP14.01□□□□□ -0.17
LSM1-203ENST00000520755 ZNF141Q15928 474 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms