RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 LRRN3Q9H3W5 708 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 ACTR10Q9NZ32 417 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 NPIPA1Q9UND3 350 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 H3BNC9 293 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 PLPP1O14494 284 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 BMP1P13497 986 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 CTXN1P60606 82 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 ZNF385BQ569K4 471 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 NOXA1Q86UR1 476 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 LSM14AQ8ND56 463 aaKnown RBP10.99□□□□□ -0.65
SYNPO-204ENST00000519664 THAP4Q8WY91 577 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 GON7Q9BXV9 100 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 MAFFQ9ULX9 164 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 NAALAD2Q9Y3Q0 740 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 ANKRD28O15084 1053 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 PPM1DO15297 605 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 ALX3O95076 343 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 HNRNPA2B1P22626 353 aaKnown RBP10.99□□□□□ -0.65
SYNPO-204ENST00000519664 UQCRC1P31930 480 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 FNTBP49356 437 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 SLC14A1Q13336 389 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 OR9A4Q8NGU2 314 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 SPPL3Q8TCT6 385 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 DEDD2Q8WXF8 326 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 MS4A4EQ96PG1 132 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 OR52D1Q9H346 318 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 GLIPR2Q9H4G4 154 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 MEN1O00255 615 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 TAS2R43P59537 309 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 PYCR3Q53H96 274 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 TMEM69Q5SWH9 247 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 HENMT1Q5T8I9 393 aaKnown RBP10.99□□□□□ -0.65
SYNPO-204ENST00000519664 OR5M10Q6IEU7 315 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 LEG1Q6P5S2 330 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 FBXO46Q6PJ61 603 aaPredicted RBP10.99□□□□□ -0.65
SYNPO-204ENST00000519664 VWA5B2Q8N398 1253 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 TMEM156Q8N614 296 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 TMIEQ8NEW7 156 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 UBTD2Q8WUN7 234 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 METTL7AQ9H8H3 244 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 IL21Q9HBE4 155 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 PSORS1C1Q9UIG5 152 aa10.99□□□□□ -0.65
SYNPO-204ENST00000519664 FER1L6Q2WGJ9 1857 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 C13orf42A0A1B0GVH6 325 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TVP23AA6NH52 213 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TLX3O43711 291 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 HPGDSO60760 199 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SEC14L2O76054 403 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 OPN1LWP04000 364 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ZNF20P17024 532 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 HSD11B1P28845 292 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 OXA1LQ15070 435 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 LAX1Q8IWV1 398 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SLC16A11Q8NCK7 471 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 OR2L3Q8NG85 312 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 OR5H6Q8NGV6 325 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 OR6N1Q8NGY5 312 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 CHTF18Q8WVB6 975 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 BPIFA2Q96DR5 249 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 PRRC1Q96M27 445 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 HS6ST2Q96MM7 605 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 OR4K3Q96R72 315 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 NEURL2Q9BR09 285 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 CA14Q9ULX7 337 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 UBR3Q6ZT12 1888 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 LOC102723532A0A0G2JNH3 316 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TEX51A0A1B0GUA7 166 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ASPDHA6ND91 283 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SLC9B1P1A6NJY1 282 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SLC16A6O15403 523 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 PEPDP12955 493 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 RAB3BP20337 219 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 FXYD6P3P58550 94 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 IHHQ14623 411 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 GPALPP1Q8IXQ4 340 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SYT14Q8NB59 555 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ACOT11Q8WXI4 607 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TM4SF18Q96CE8 201 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TMEM41AQ96HV5 264 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SLC25A18Q9H1K4 315 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 MBNL1Q9NR56 388 aaKnown RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 NUP50Q9UKX7 468 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ERVK-19Q9WJR5 959 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SNX11Q9Y5W9 270 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 GFYI3L273 518 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 L7N2F9 121 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 FOXE1O00358 373 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ZNF432O94892 652 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 CLEC2LP0C7M8 214 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ARRB1P49407 418 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ARHGAP19Q14CB8 494 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 PRAMEF17Q5VTA0 474 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 STEAP3Q658P3 488 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 KDM4DQ6B0I6 523 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ASTLQ6HA08 431 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 ADIPOR2Q86V24 386 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 GKN2Q86XP6 184 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 BEST4Q8NFU0 473 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SLC7A13Q8TCU3 470 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SNAPC3Q92966 411 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms