RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SDF2Q99470 211 aa8.8□□□□□ -1
RNF4-221ENST00000513643 KLHDC3Q9BQ90 382 aa8.8□□□□□ -1
RNF4-221ENST00000513643 YIPF4Q9BSR8 244 aa8.8□□□□□ -1
RNF4-221ENST00000513643 DSN1Q9H410 356 aa8.8□□□□□ -1
RNF4-221ENST00000513643 CALHM2Q9HA72 323 aa8.8□□□□□ -1
RNF4-221ENST00000513643 HHATLQ9HCP6 504 aa8.8□□□□□ -1
RNF4-221ENST00000513643 CHST11Q9NPF2 352 aa8.8□□□□□ -1
RNF4-221ENST00000513643 SDHAF3Q9NRP4 125 aa8.8□□□□□ -1
RNF4-221ENST00000513643 TAS2R10Q9NYW0 307 aa8.8□□□□□ -1
RNF4-221ENST00000513643 ZIM2Q9NZV7 527 aa8.8□□□□□ -1
RNF4-221ENST00000513643 MED11Q9P086 117 aa8.8□□□□□ -1
RNF4-221ENST00000513643 Q9UFV3 132 aa8.8□□□□□ -1
RNF4-221ENST00000513643 KCNE5Q9UJ90 142 aa8.8□□□□□ -1
RNF4-221ENST00000513643 SNX8Q9Y5X2 465 aa8.8□□□□□ -1
RNF4-221ENST00000513643 AKAP9Q99996 3911 aa8.8□□□□□ -1
RNF4-221ENST00000513643 CSMD2Q7Z408 3487 aa8.8□□□□□ -1
RNF4-221ENST00000513643 POLQO75417 2590 aa8.79□□□□□ -1
RNF4-221ENST00000513643 SPG11Q96JI7 2443 aa8.79□□□□□ -1
RNF4-221ENST00000513643 C15orf38-AP3S2A0A0A6YYH1 394 aa8.79□□□□□ -1
RNF4-221ENST00000513643 PRAMEF27A3QJZ7 478 aa8.79□□□□□ -1
RNF4-221ENST00000513643 C7orf72A4D263 438 aa8.79□□□□□ -1
RNF4-221ENST00000513643 DUXAA6NLW8 204 aa8.79□□□□□ -1
RNF4-221ENST00000513643 LINC01387J3KSC0 135 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ETV2O00321 342 aaPredicted RBP8.79□□□□□ -1
RNF4-221ENST00000513643 HCRTR2O43614 444 aa8.79□□□□□ -1
RNF4-221ENST00000513643 SCO2O43819 266 aa8.79□□□□□ -1
RNF4-221ENST00000513643 SLC22A3O75751 556 aa8.79□□□□□ -1
RNF4-221ENST00000513643 IL6P05231 212 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ZCCHC18P0CG32 403 aa8.79□□□□□ -1
RNF4-221ENST00000513643 HOXB9P17482 250 aaPredicted RBP8.79□□□□□ -1
RNF4-221ENST00000513643 MATN1P21941 496 aa8.79□□□□□ -1
RNF4-221ENST00000513643 MSX1P28360 303 aa8.79□□□□□ -1
RNF4-221ENST00000513643 S100A3P33764 101 aa8.79□□□□□ -1
RNF4-221ENST00000513643 CDKN2CP42773 168 aa8.79□□□□□ -1
RNF4-221ENST00000513643 IDH3AP50213 366 aa8.79□□□□□ -1
RNF4-221ENST00000513643 MVDP53602 400 aa8.79□□□□□ -1
RNF4-221ENST00000513643 LRRC74AQ0VAA2 488 aa8.79□□□□□ -1
RNF4-221ENST00000513643 FUT5Q11128 374 aa8.79□□□□□ -1
RNF4-221ENST00000513643 CD226Q15762 336 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ZNF141Q15928 474 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ARHGAP11BQ3KRB8 267 aa8.79□□□□□ -1
RNF4-221ENST00000513643 DCST2Q5T1A1 773 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ZNF787Q6DD87 383 aa8.79□□□□□ -1
RNF4-221ENST00000513643 MSANTD1Q6ZTZ1 278 aa8.79□□□□□ -1
RNF4-221ENST00000513643 MTERF4Q7Z6M4 381 aaKnown RBP8.79□□□□□ -1
RNF4-221ENST00000513643 ANKRD46Q86W74 232 aa8.79□□□□□ -1
RNF4-221ENST00000513643 CCDC71Q8IV32 467 aaPredicted RBP8.79□□□□□ -1
RNF4-221ENST00000513643 FUNDC1Q8IVP5 155 aa8.79□□□□□ -1
RNF4-221ENST00000513643 MISPQ8IVT2 679 aa8.79□□□□□ -1
RNF4-221ENST00000513643 CLEC4FQ8N1N0 589 aa8.79□□□□□ -1
RNF4-221ENST00000513643 COX18Q8N8Q8 333 aa8.79□□□□□ -1
RNF4-221ENST00000513643 NAXEQ8NCW5 288 aa8.79□□□□□ -1
RNF4-221ENST00000513643 VPS37AQ8NEZ2 397 aa8.79□□□□□ -1
RNF4-221ENST00000513643 OR5AK3PQ8NH89 298 aa8.79□□□□□ -1
RNF4-221ENST00000513643 LRRC8CQ8TDW0 803 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ADAMTS15Q8TE58 950 aa8.79□□□□□ -1
RNF4-221ENST00000513643 OIT3Q8WWZ8 545 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ZNF524Q96C55 264 aa8.79□□□□□ -1
RNF4-221ENST00000513643 SDCCAG3Q96C92 435 aa8.79□□□□□ -1
RNF4-221ENST00000513643 OTUB1Q96FW1 271 aaPredicted RBP8.79□□□□□ -1
RNF4-221ENST00000513643 SPOCK3Q9BQ16 436 aa8.79□□□□□ -1
RNF4-221ENST00000513643 CCDC28BQ9BUN5 200 aa8.79□□□□□ -1
RNF4-221ENST00000513643 NMUR2Q9GZQ4 415 aa8.79□□□□□ -1
RNF4-221ENST00000513643 ZNF350Q9GZX5 532 aa8.79□□□□□ -1
RNF4-221ENST00000513643 HOXD1Q9GZZ0 328 aa8.79□□□□□ -1
RNF4-221ENST00000513643 EXO5Q9H790 373 aa8.79□□□□□ -1
RNF4-221ENST00000513643 NPDC1Q9NQX5 325 aaPredicted RBP8.79□□□□□ -1
RNF4-221ENST00000513643 TMEM45AQ9NWC5 275 aa8.79□□□□□ -1
RNF4-221ENST00000513643 PPP4R1LQ9P1A2 415 aa8.79□□□□□ -1
RNF4-221ENST00000513643 FAF1Q9UNN5 650 aaPredicted RBP8.79□□□□□ -1
RNF4-221ENST00000513643 GMEB1Q9Y692 573 aa8.79□□□□□ -1
RNF4-221ENST00000513643 INTS1Q8N201 2190 aaKnown RBP8.79□□□□□ -1
RNF4-221ENST00000513643 RNF103-CHMP3A0A140T963 221 aa8.78□□□□□ -1
RNF4-221ENST00000513643 OR2M5A3KFT3 312 aa8.78□□□□□ -1
RNF4-221ENST00000513643 FAM47E-STBD1D6RA91 191 aa8.78□□□□□ -1
RNF4-221ENST00000513643 PRSS44E7EML9 344 aa8.78□□□□□ -1
RNF4-221ENST00000513643 UBDO15205 165 aa8.78□□□□□ -1
RNF4-221ENST00000513643 CFLARO15519 480 aa8.78□□□□□ -1
RNF4-221ENST00000513643 FCMRO60667 390 aa8.78□□□□□ -1
RNF4-221ENST00000513643 NTN1O95631 604 aa8.78□□□□□ -1
RNF4-221ENST00000513643 AK1P00568 194 aa8.78□□□□□ -1
RNF4-221ENST00000513643 NID1P14543 1247 aa8.78□□□□□ -1
RNF4-221ENST00000513643 MAGEA8P43361 318 aa8.78□□□□□ -1
RNF4-221ENST00000513643 STARP49675 285 aa8.78□□□□□ -1
RNF4-221ENST00000513643 CLK3P49761 638 aaKnown RBP8.78□□□□□ -1
RNF4-221ENST00000513643 ATP12AP54707 1039 aa8.78□□□□□ -1
RNF4-221ENST00000513643 DLX5P56178 289 aa8.78□□□□□ -1
RNF4-221ENST00000513643 RPS26P62854 115 aaKnown RBP8.78□□□□□ -1
RNF4-221ENST00000513643 TP53BP2Q13625 1128 aa8.78□□□□□ -1
RNF4-221ENST00000513643 SF3B4Q15427 424 aaKnown RBP eCLIP8.78□□□□□ -12e-8■■□□□ 11.9
RNF4-221ENST00000513643 MAPK11Q15759 364 aa8.78□□□□□ -1
RNF4-221ENST00000513643 FBXL19-AS1Q494R0 122 aa8.78□□□□□ -1
RNF4-221ENST00000513643 ARSKQ6UWY0 536 aa8.78□□□□□ -1
RNF4-221ENST00000513643 GALNT10Q86SR1 603 aa8.78□□□□□ -1
RNF4-221ENST00000513643 IFNEQ86WN2 208 aa8.78□□□□□ -1
RNF4-221ENST00000513643 LACC1Q8IV20 430 aa8.78□□□□□ -1
RNF4-221ENST00000513643 ZNF295-AS1Q8N0V1 137 aa8.78□□□□□ -1
RNF4-221ENST00000513643 OR4K17Q8NGC6 315 aa8.78□□□□□ -1
RNF4-221ENST00000513643 OR5D16Q8NGK9 328 aa8.78□□□□□ -1
RNF4-221ENST00000513643 OR4A15Q8NGL6 344 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms