RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 KCTD7Q96MP8 289 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 NEURL2Q9BR09 285 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 ZNF559Q9BR84 538 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 C6orf106Q9H6K1 298 aaPredicted RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 ANKRA2Q9H9E1 313 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 SLC7A7Q9UM01 511 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 DOLKQ9UPQ8 538 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 CLCA2Q9UQC9 943 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 MRPS33Q9Y291 106 aaKnown RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 SPIN1Q9Y657 262 aaPredicted RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 LOC105369274A0A096LPK9 316 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 LOC102723532A0A0G2JNH3 316 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 SPTY2D1-AS1A0A0U1RR47 76 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 SLC35F4A4IF30 521 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 UNC119BA6NIH7 251 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 FGF17O60258 216 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 RCBTB2O95199 551 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 SLC35E2P0CK97 266 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 BMP7P18075 431 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 GALP22466 123 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 GCGRP47871 477 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 ZNF136P52737 540 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 GAS1P54826 345 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 ZNF155Q12901 538 aaPredicted RBP11.14□□□□□ -0.63
NUP54-202ENST00000502850 DNASE1L3Q13609 305 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 CCINQ13939 588 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 GPR68Q15743 365 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 PRICKLE4Q2TBC4 344 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 AADACL4Q5VUY2 407 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 STEAP3Q658P3 488 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 ZNF613Q6PF04 617 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 NKAIN4Q8IVV8 208 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 OR4N5Q8IXE1 308 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 OR4N4Q8N0Y3 316 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 OR52N1Q8NH53 320 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 FANK1Q8TC84 345 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 GPR151Q8TDV0 419 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 SLC25A46Q96AG3 418 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 CD180Q99467 661 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 GPR27Q9NS67 375 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 MAT2BQ9NZL9 334 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 POMT2Q9UKY4 750 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 BAIAP2Q9UQB8 552 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 EXOGQ9Y2C4 368 aaKnown RBP11.14□□□□□ -0.63
NUP54-202ENST00000502850 SCN3AQ9NY46 2000 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 ZNF318Q5VUA4 2279 aa11.14□□□□□ -0.63
NUP54-202ENST00000502850 CDHR4A6H8M9 788 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 ZNF860A6NHJ4 632 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TTC36A6NLP5 189 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 C2CD4DB7Z1M9 353 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 BOLA2-SMG1P6H3BVE0 249 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 OR10H2O60403 315 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 BRINP1O60477 761 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 NKX2-2O95096 273 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 DLGAP3O95886 979 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 IGHA1P01876 353 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 IGHV4-34P06331 123 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 PAICSP22234 425 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 CFL1P23528 166 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 FGF9P31371 208 aaPredicted RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 MAP3K8P41279 467 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SLC1A3P43003 542 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 GPR4P46093 362 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SLC9A3P48764 834 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 PSMD4P55036 377 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 BDH1Q02338 343 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 HHEXQ03014 270 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SIGLEC14Q08ET2 396 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TRMT12Q53H54 448 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 CLEC12AQ5QGZ9 265 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 MRPL2Q5T653 305 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 HSDL2Q6YN16 418 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TMPRSS11AQ6ZMR5 421 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 QSOX2Q6ZRP7 698 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 WDR53Q7Z5U6 358 aaPredicted RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 BCDIN3DQ7Z5W3 292 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 PARGQ86W56 976 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SLC22A18ASQ8N1D0 253 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 VWA5B2Q8N398 1253 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 OR4Q3Q8NH05 313 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TMEM255BQ8WV15 326 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TMEM239Q8WW34 195 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 HOXB13Q92826 284 aaPredicted RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 CTHRC1Q96CG8 243 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 ZNF578Q96N58 590 aaPredicted RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 ARHGAP9Q9BRR9 750 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TMEM27Q9HBJ8 222 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 CD93Q9NPY3 652 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 INPP5EQ9NRR6 644 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 EVA1BQ9NVM1 165 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TXNL4BQ9NX01 149 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 MED31Q9Y3C7 131 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 CMAHPQ9Y471 501 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 TRIOO75962 3097 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 RGS5O15539 181 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SRPX2O60687 465 aaPredicted RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 THEGLP0DJG4 465 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 ATP6V1E1P36543 226 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 RPS19P39019 145 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 RBM34P42696 430 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms