RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 OPN1LWP04000 364 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SUZ12Q15022 739 aaKnown RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 UBE3DQ7Z6J8 389 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 FAM160A2Q8N612 972 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 OR2T33Q8NG76 320 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 OR4N2Q8NGD1 307 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 OR9A4Q8NGU2 314 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SUN3Q8TAQ9 357 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 RASSF5Q8WWW0 418 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 NKD1Q969G9 470 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 CHST8Q9H2A9 424 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 HINT3Q9NQE9 182 aaKnown RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 CLDND1Q9NY35 253 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 A0A0G2JMP0 313 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 A0A0X1KG70 313 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 GXYLT2A0PJZ3 443 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 FAM86C2PA6NEL3 165 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 C11orf98E9PRG8 122 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SPINT1O43278 529 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 EMC8O43402 210 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SCG5P05408 212 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SRPRAP08240 638 aaKnown RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 PCSK2P16519 638 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 OC90Q02509 493 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.57□□□□□ -0.4
GPC1-209ENST00000495100 ILKQ13418 452 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 FGL2Q14314 439 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 FLYWCH1Q4VC44 716 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 MRPL2Q5T653 305 aaKnown RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 TMEM99Q8N816 258 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 OR4M2Q8NGB6 313 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 ASB15Q8WXK1 588 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 MS4A6EQ96DS6 147 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SLC35A4Q96G79 324 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 OR52D1Q9H346 318 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 TCEAL2Q9H3H9 227 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 TMEM74BQ9NUR3 256 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 KLHL42Q9P2K6 505 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 RASD1Q9Y272 281 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 COLEC10Q9Y6Z7 277 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 CDC42EP2O14613 210 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 CISD3P0C7P0 127 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 MRPL19P49406 292 aaKnown RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 AP2S1P53680 142 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 FBXW4P57775 412 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 OR12D2P58182 307 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 RPE65Q16518 533 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 DMRTC1Q5HYR2 192 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 HES5Q5TA89 166 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 ABHD17CQ6PCB6 329 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 TUBA3EQ6PEY2 450 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 LINGO2Q7L985 606 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 NRSN1Q8IZ57 195 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 LRIG1Q96JA1 1093 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 RSPO3Q9BXY4 272 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 NUDT15Q9NV35 164 aa12.57□□□□□ -0.4
GPC1-209ENST00000495100 SPTBN5Q9NRC6 3674 aaKnown RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 RIIAD1A6NNX1 92 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 DRD3P35462 400 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 ILF3Q12906 894 aaKnown RBP eCLIP12.56□□□□□ -0.4
GPC1-209ENST00000495100 PUS10Q3MIT2 529 aaKnown RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 ZNF362Q5T0B9 420 aaPredicted RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 ASPGQ86U10 573 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 KIF18BQ86Y91 864 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 GRPEL2Q8TAA5 225 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 OR1E3Q8WZA6 343 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 PPP1R14BQ96C90 147 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 ASB16Q96NS5 453 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 TSSK2Q96PF2 358 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 PDCD1LG2Q9BQ51 273 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 ALG8Q9BVK2 526 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 GSDMCQ9BYG8 508 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 SLC7A5P2Q9GIP4 190 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 LMAN2LQ9H0V9 348 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 CPNE5Q9HCH3 593 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 SLC6A20Q9NP91 592 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 PNO1Q9NRX1 252 aaKnown RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 NCKAP1Q9Y2A7 1128 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 ADAM18Q9Y3Q7 739 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 TCF20Q9UGU0 1960 aaKnown RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 SH3D21A4FU49 640 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 FAM172BPA6NC97 362 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 AKAP8O43823 692 aaKnown RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 LILRB3O75022 631 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 SNRPBP14678 240 aaKnown RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 ADH7P40394 386 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 SLC1A3P43003 542 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 MAP2K3P46734 347 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 ARL4DP49703 201 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 SAXO2Q658L1 398 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 PPP2R2DQ66LE6 453 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 MZT2BQ6NZ67 158 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 FGD2Q7Z6J4 655 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 LRRC25Q8N386 305 aaPredicted RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 OR2L5Q8NG80 312 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 AP3S1Q92572 193 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 EFHD2Q96C19 240 aaPredicted RBP12.56□□□□□ -0.4
GPC1-209ENST00000495100 OMA1Q96E52 524 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 ELP4Q96EB1 424 aa12.56□□□□□ -0.4
GPC1-209ENST00000495100 C4orf36Q96KX1 117 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms