RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GPR89BP0CG08 455 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 NPIPA8P0DM63 369 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 POLR2CP19387 275 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 MPIP34949 423 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 DDOSTP39656 456 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SRP9P49458 86 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 MLLT11Q13015 90 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 NUDT18Q6ZVK8 323 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 KRT74Q7RTS7 529 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF761Q86XN6 746 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 OR51G2Q8NGK0 314 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 C17orf50Q8WW18 174 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC35A4Q96G79 324 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF681Q96N22 645 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SRMSQ9H3Y6 488 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF780BQ9Y6R6 833 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 FANCMQ8IYD8 2048 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 EMC8O43402 210 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 LANCL1O43813 399 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SCO1O75880 301 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 PAHP00439 452 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ALPPP05187 535 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 NTSR1P30989 418 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 WNT4P56705 351 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 PRR5P85299 388 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 TGM3Q08188 693 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF542PQ5EBM4 170 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 PRRT3Q5FWE3 981 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF425Q6IV72 752 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 KIAA1324Q6UXG2 1013 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF730Q6ZMV8 503 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 MFSD9Q8NBP5 474 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 RAB11FIP5Q9BXF6 653 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC13A4Q9UKG4 626 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 MRPS2Q9Y399 296 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 CNTRLQ7Z7A1 2325 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC30A4O14863 429 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 YES1P07947 543 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 HOXD11P31277 338 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 AHRP35869 848 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 MTNR1AP48039 350 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC9A3P48764 834 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 LCN1P1Q5VSP4 162 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 RNF170Q96K19 258 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 TRIM45Q9H8W5 580 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 LOC105369274A0A096LPK9 316 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A0B4J203 849 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 C12orf71A8MTZ7 269 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 LDB3O75112 727 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 MAP2K3P46734 347 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 SMIM11AP58511 58 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 KLHL12Q53G59 568 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 OR4N4Q8N0Y3 316 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 ANKK1Q8NFD2 765 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 OR4M2Q8NGB6 313 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 NEIL3Q8TAT5 605 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 GIMAP5Q96F15 307 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 SNX18Q96RF0 628 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 BCL2L10Q9HD36 194 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 KLHL1Q9NR64 748 aa15.41■□□□□ 0.06
CCDC88B-210ENST00000494566 THY1P04216 161 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 PIPP12273 146 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 HYAL1Q12794 435 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 SRSF5Q13243 272 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 CEP78Q5JTW2 689 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 FAM209AQ5JX71 171 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 TMEM201Q5SNT2 666 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 C1orf94Q6P1W5 598 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 FBXO42Q6P3S6 717 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 BEST4Q8NFU0 473 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 OR56A1Q8NGH5 318 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 TEX47Q8TBZ9 253 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 ADAMTS15Q8TE58 950 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 TMEM255BQ8WV15 326 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 SPRYD4Q8WW59 207 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 DEDD2Q8WXF8 326 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 UFD1Q92890 307 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 SIPA1Q96FS4 1042 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 STARD5Q9NSY2 213 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 NDOR1Q9UHB4 597 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A0G2JPF8 293 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 HNRNPCL2B2RXH8 293 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 HNRNPCL3B7ZW38 293 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 LIMS3P0CW19 117 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 LIMS4P0CW20 117 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 HNRNPCL4P0DMR1 293 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 CPN2P22792 545 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 CDH11P55287 796 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 OR10A3P58181 314 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 SRP54P61011 504 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 TRMT12Q53H54 448 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 TMEM64Q6YI46 380 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 RFPL4BQ6ZWI9 263 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 PAQR7Q86WK9 346 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 OR6C4Q8NGE1 309 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 GRPEL2Q8TAA5 225 aa15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF764Q96H86 408 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 SECISBP2Q96T21 854 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-210ENST00000494566 GRIP1Q9Y3R0 1128 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms