RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CCDC126Q96EE4 140 aa11.1□□□□□ -0.63
CPSF3-204ENST00000489403 KLHDC3Q9BQ90 382 aa11.1□□□□□ -0.63
CPSF3-204ENST00000489403 RRAGDQ9NQL2 400 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-204ENST00000489403 PAQR5Q9NXK6 330 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-204ENST00000489403 PSMC3IPQ9P2W1 217 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-204ENST00000489403 TBK1Q9UHD2 729 aa11.1□□□□□ -0.63
CPSF3-204ENST00000489403 DCDC2Q9UHG0 476 aa11.1□□□□□ -0.63
CPSF3-204ENST00000489403 WBP11Q9Y2W2 641 aaKnown RBP11.1□□□□□ -0.63
CPSF3-204ENST00000489403 PTGDR2Q9Y5Y4 395 aa11.1□□□□□ -0.63
CPSF3-204ENST00000489403 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 A0A087WZY1 265 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 A0A1W2PPM1 405 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 A0A1W2PRB8 838 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 INAFM1C9JVW0 142 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 H3BQF6 201 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 TNFSF11O14788 317 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 NDUFB5O43674 189 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 CXCL13O43927 109 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 GLRA3O75311 464 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 CRCPO75575 148 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 CNOT4O95628 575 aaKnown RBP11.09□□□□□ -0.63
CPSF3-204ENST00000489403 OPN1LWP04000 364 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 PROCP04070 461 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 ACP2P11117 423 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 PPP3CBP16298 524 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 IL11P20809 199 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 PRPH2P23942 346 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 PSMA4P25789 261 aaKnown RBP11.09□□□□□ -0.63
CPSF3-204ENST00000489403 GPC1P35052 558 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 PRKAG1P54619 331 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 CTBP2P56545 445 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 SLC18A2Q05940 514 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 PLPPR5Q32ZL2 321 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 VPS26BQ4G0F5 336 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 FIGNL1Q6PIW4 674 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 SH2D5Q6ZV89 423 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 ZAR1Q86SH2 424 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 WDR75Q8IWA0 830 aaKnown RBP11.09□□□□□ -0.63
CPSF3-204ENST00000489403 GTPBP8Q8N3Z3 284 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-204ENST00000489403 CDRT4Q8N9R6 151 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 MNS1Q8NEH6 495 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 NUP43Q8NFH3 380 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 FBXO30Q8TB52 745 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 GIMAP5Q96F15 307 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 RNF145Q96MT1 663 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 MED17Q9NVC6 651 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 STOML1Q9UBI4 398 aa11.09□□□□□ -0.63
CPSF3-204ENST00000489403 MCTS1Q9ULC4 181 aaKnown RBP11.09□□□□□ -0.63
CPSF3-204ENST00000489403 A0A0J9YW62 118 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 C7orf72A4D263 438 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 NPIPB8E9PQR5 432 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 ADAMDEC1O15204 470 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 SEC22BO75396 215 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 KCNK2O95069 426 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 SYNGR4O95473 234 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 NGFRP08138 427 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 FAM153BP0C7A2 387 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 UROSP10746 265 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 PAX1P15863 534 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 FRKP42685 505 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-204ENST00000489403 NR1H2P55055 460 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 DNAJB13P59910 316 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 NAA20P61599 178 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 RAC1P63000 192 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 FAM153CQ494X1 144 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 CFAP157Q5JU67 520 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 CLEC6AQ6EIG7 209 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 BEND4Q6ZU67 534 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 ESPNLQ6ZVH7 1005 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 SZRD1Q7Z422 152 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 SLC16A11Q8NCK7 471 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 OR2V1Q8NHB1 315 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 POC1BQ8TC44 478 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 FAM110BQ8TC76 370 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 TMEM171Q8WVE6 324 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 ZBTB8AQ96BR9 441 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 OTUB1Q96FW1 271 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-204ENST00000489403 PLPPR2Q96GM1 343 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF764Q96H86 408 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-204ENST00000489403 SH3YL1Q96HL8 342 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-204ENST00000489403 METTL2AQ96IZ6 378 aaKnown RBP11.08□□□□□ -0.64
CPSF3-204ENST00000489403 FCRL1Q96LA6 429 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 MDFIQ99750 246 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 TMEM204Q9BSN7 226 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 TXLNGYQ9BZA5 131 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 ACTR6Q9GZN1 396 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 TMEM185BQ9H7F4 350 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 LRTM1Q9HBL6 345 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 GLRX2Q9NS18 164 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF701Q9NV72 531 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-204ENST00000489403 FBXO34Q9NWN3 711 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 NTMQ9P121 344 aa11.08□□□□□ -0.64
CPSF3-204ENST00000489403 HS3ST1O14792 307 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 AKAP10O43572 662 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 PLIN3O60664 434 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 TBX19O60806 448 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 TUBBP07437 444 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 NID1P14543 1247 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 SDC1P18827 310 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 PSMB1P20618 241 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms