RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 DNAJA2O60884 412 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 TRIM3O75382 744 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 NME6O75414 186 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 UNC5CO95185 931 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ANGPTL1O95841 491 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ESRRAP11474 423 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 BMP2P12643 396 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 IL7RP16871 459 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 GPX2P18283 190 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 PTPN6P29350 595 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 EIF1P41567 113 aaKnown RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 SLC6A8P48029 635 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 DNASE1L1P49184 302 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ST13P50502 369 aaKnown RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF41P51814 821 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 SUMO3P55854 103 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 DSCR4P56555 118 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 MXRA7P84157 204 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 KRT72Q14CN4 511 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 GPR68Q15743 365 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 GLYR1Q49A26 553 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 KLHL26Q53HC5 615 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 RUNDC3AQ59EK9 446 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 PAGE3Q5JUK9 113 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 CCNJQ5T5M9 372 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 PRAMEF20Q5VT98 475 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 AP1ARQ63HQ0 302 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 REP15Q6BDI9 236 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 REEP3Q6NUK4 255 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ERICH5Q6P6B1 374 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 GFRALQ6UXV0 394 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 DLEU7Q6UYE1 221 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 HACD2Q6Y1H2 254 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 SERPINA11Q86U17 422 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF440Q8IYI8 595 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 CLEC4FQ8N1N0 589 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF619Q8N2I2 560 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 AMER2Q8N7J2 671 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ST6GALNAC3Q8NDV1 305 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 TOR1AIP2Q8NFQ8 470 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 OR4C3Q8NH37 302 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 BBS10Q8TAM1 723 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 PHOSPHO1Q8TCT1 267 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 DUSP19Q8WTR2 217 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 RASSF5Q8WWW0 418 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 RAB8BQ92930 207 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 FRMD6Q96NE9 622 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 NODALQ96S42 347 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 BARD1Q99728 777 aaKnown RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 CCDC106Q9BWC9 280 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 HES7Q9BYE0 225 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 TTTY12Q9BZ98 90 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF350Q9GZX5 532 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 TMEM38AQ9H6F2 299 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 EVA1AQ9H8M9 152 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ACKR4Q9NPB9 350 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 A4GALTQ9NPC4 353 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 SLC52A3Q9NQ40 469 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ASF1BQ9NVP2 202 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 KLHL28Q9NXS3 571 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 TUBA8Q9NY65 449 aaPredicted RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 VAPAQ9P0L0 249 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 TAGLN3Q9UI15 199 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 DKKL1Q9UK85 242 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ANGPT4Q9Y264 503 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 MRPS18CQ9Y3D5 142 aaKnown RBP7.56□□□□□ -1.2
SF3A1-208ENST00000485618 NBASA2RRP1 2371 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 NBPF19A0A087WUL8 3843 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 NINQ8N4C6 2090 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 IGLV3-32A0A0A0MS00 114 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 TRGV5A0A0B4J1U4 118 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 OR14I1A6ND48 311 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 ANKUB1A6NFN9 424 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 SERINC4A6NH21 518 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 FAM166BA8MTA8 275 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 PRRG2O14669 202 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 GNB5O14775 395 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 SNPHO15079 494 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF264O43296 627 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 SCO2O43819 266 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 KIAA0513O60268 411 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 CDC40O60508 579 aaKnown RBP eCLIP7.55□□□□□ -1.2
SF3A1-208ENST00000485618 GLSO94925 669 aaPredicted RBP7.55□□□□□ -1.2
SF3A1-208ENST00000485618 H6PDO95479 791 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 OXSR1O95747 527 aaPredicted RBP7.55□□□□□ -1.2
SF3A1-208ENST00000485618 NUDT14O95848 222 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 HOXD4P09016 255 aaPredicted RBP7.55□□□□□ -1.2
SF3A1-208ENST00000485618 TFPTP0C1Z6 253 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 ETFAP13804 333 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 ETS2P15036 469 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 FKBP2P26885 142 aaKnown RBP7.55□□□□□ -1.2
SF3A1-208ENST00000485618 ADH7P40394 386 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 NUDT2P50583 147 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 CASP9P55211 416 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 EEFSECP57772 596 aaKnown RBP7.55□□□□□ -1.2
SF3A1-208ENST00000485618 CDK6Q00534 326 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 FOXO1Q12778 655 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF141Q15928 474 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 GRAMD1BQ3KR37 738 aa7.55□□□□□ -1.2
SF3A1-208ENST00000485618 SPATS1Q496A3 300 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms