RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF221Q9UK13 617 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 KANK1Q14678 1352 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 FAM240BA0A1B0GVZ2 78 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 A8MXK9 166 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 MSH4O15457 936 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 TSC22D2O75157 780 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ECI2O75521 394 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ATP5A1P25705 553 aaKnown RBP4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ETV5P41161 510 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 NOVA1P51513 510 aaKnown RBP4.13□□□□□ -1.75
UPF3B-203ENST00000478840 RGS1Q08116 209 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 DPYSL3Q14195 570 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 C10orf120Q5SQS8 335 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 LGSNQ5TDP6 509 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ZC2HC1BQ5TFG8 222 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 PVRIGQ6DKI7 326 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ACSM5Q6NUN0 579 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 FAAP20Q6NZ36 180 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 PRSS48Q7RTY5 328 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 C16orf62Q7Z3J2 963 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ACOT1Q86TX2 421 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 SLC38A6Q8IZM9 456 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 C15orf54Q8N8G6 183 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 WDSUB1Q8N9V3 476 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 CSNK1G2-AS1Q8NCQ2 148 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 OR5D13Q8NGL4 314 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 MIPOL1Q8TD10 442 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 AENQ8WTP8 325 aaKnown RBP4.13□□□□□ -1.75
UPF3B-203ENST00000478840 C12orf66Q96MD2 445 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 NPAS2Q99743 824 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 TUBGCP2Q9BSJ2 902 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 FANCFQ9NPI8 374 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 SCRT2Q9NQ03 307 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 EXOSC3Q9NQT5 275 aaKnown RBP4.13□□□□□ -1.75
UPF3B-203ENST00000478840 ELOVL2Q9NXB9 296 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 AIPL1Q9NZN9 384 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 RNF24Q9Y225 148 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 RASD1Q9Y272 281 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 NTNG1Q9Y2I2 539 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 FRMPD4Q14CM0 1322 aa4.13□□□□□ -1.75
UPF3B-203ENST00000478840 RPL37AP8A6NKH3 93 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 PCP4L1A6NKN8 68 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 TAPBPO15533 448 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 FCMRO60667 390 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 SCGNO76038 276 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 F10P00742 488 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 MELTFP08582 738 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 HPCAL1P37235 193 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 OR1D4P47884 311 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 ATP12AP54707 1039 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 RND3P61587 244 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 RPL8P62917 257 aaKnown RBP4.12□□□□□ -1.75
UPF3B-203ENST00000478840 IRX1P78414 480 aaPredicted RBP4.12□□□□□ -1.75
UPF3B-203ENST00000478840 CYP51A1Q16850 503 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 SLC5A12Q1EHB4 618 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 ZNF506Q5JVG8 444 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 FAM120AOSQ5T036 256 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 ZSCAN25Q6NSZ9 544 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 FAHD2BQ6P2I3 314 aaPredicted RBP4.12□□□□□ -1.75
UPF3B-203ENST00000478840 TAS2R42Q7RTR8 314 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 MOB3BQ86TA1 216 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 ERICH1Q86X53 443 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 TMEM123Q8N131 208 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 STXBP6Q8NFX7 210 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 OR1F12Q8NHA8 337 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 RFESDQ8TAC1 157 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 CNIH3Q8TBE1 160 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 BADQ92934 168 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 FBXO32Q969P5 355 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 FAHD2AQ96GK7 314 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 NAF1Q96HR8 494 aaKnown RBP4.12□□□□□ -1.75
UPF3B-203ENST00000478840 TPD52L3Q96J77 140 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 PIWIL1Q96J94 861 aaKnown RBP4.12□□□□□ -1.75
UPF3B-203ENST00000478840 ZNF597Q96LX8 424 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 SLC39A3Q9BRY0 314 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 GON7Q9BXV9 100 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 RAB18Q9NP72 206 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 SENP1Q9P0U3 644 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 RCOR3Q9P2K3 495 aaPredicted RBP4.12□□□□□ -1.75
UPF3B-203ENST00000478840 MUTYHQ9UIF7 546 aa4.12□□□□□ -1.75
UPF3B-203ENST00000478840 OR6C65A6NJZ3 312 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 ZNF264O43296 627 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 ZG16O60844 167 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 H2AFZP0C0S5 128 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 OXTRP30559 389 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 CDH5P33151 784 aaPredicted RBP4.11□□□□□ -1.75
UPF3B-203ENST00000478840 P2RY1P47900 373 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 CASP4P49662 377 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 ATP5IP56385 69 aaPredicted RBP4.11□□□□□ -1.75
UPF3B-203ENST00000478840 ACTR3P61158 418 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 RAB40BQ12829 278 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 MXD4Q14582 209 aaPredicted RBP4.11□□□□□ -1.75
UPF3B-203ENST00000478840 CFAP221Q4G0U5 840 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 TPGS2Q68CL5 300 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 LINC01561Q8N1V8 128 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 TRPV1Q8NER1 839 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 IL1F10Q8WWZ1 152 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 AGAP3Q96P47 875 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 CITED1Q99966 193 aa4.11□□□□□ -1.75
UPF3B-203ENST00000478840 PARD6BQ9BYG5 372 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms