RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 REP15Q6BDI9 236 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 TYW3Q6IPR3 259 aaKnown RBP11.31□□□□□ -0.6
DDX56-209ENST00000473924 DLEU7Q6UYE1 221 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 TRILQ7L0X0 811 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 PIGWQ7Z7B1 504 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 MISPQ8IVT2 679 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 MSRB3Q8IXL7 192 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 ZNF619Q8N2I2 560 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 ANKFN1Q8N957 763 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 PCYOX1LQ8NBM8 494 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 OR14L1PQ8NHC6 308 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 RP9Q8TA86 221 aaKnown RBP11.31□□□□□ -0.6
DDX56-209ENST00000473924 CCT8L2Q96SF2 557 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 CGREF1Q99674 301 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 THUMPD3Q9BV44 507 aaKnown RBP11.31□□□□□ -0.6
DDX56-209ENST00000473924 SLC6A15Q9H2J7 730 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 UBQLN3Q9H347 655 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 CALML5Q9NZT1 146 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 MED11Q9P086 117 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 FBXL2Q9UKC9 423 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 DTNAQ9Y4J8 743 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 LIPGQ9Y5X9 500 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 SPENQ96T58 3664 aaKnown RBP11.31□□□□□ -0.6
DDX56-209ENST00000473924 SVILO95425 2214 aa11.31□□□□□ -0.6
DDX56-209ENST00000473924 TRBV5-3A0A0A0MS03 114 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 PRAMEF27A3QJZ7 478 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 C5orf58C9J3I9 102 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 NPIPA2E9PIF3 369 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 NPIPA3F8WFD2 350 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 PRRG2O14669 202 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 ZNHIT1O43257 154 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 HCRTR2O43614 444 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 KIAA0513O60268 411 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 SLC19A2O60779 497 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 NPPAP01160 153 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 HPNP05981 417 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 GUSBP08236 651 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 COX4I1P13073 169 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 TCEA1P23193 301 aaKnown RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 DPP4P27487 766 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 SRD5A2P31213 254 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 CRISP3P54108 245 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 DSCR4P56555 118 aaPredicted RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 KCNC4Q03721 635 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 CHRNEQ04844 493 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 CAPRIN1Q14444 709 aaKnown RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 CD226Q15762 336 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 ZNF141Q15928 474 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 ZNF630Q2M218 657 aaPredicted RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.3□□□□□ -0.6
DDX56-209ENST00000473924 TRMT5Q32P41 509 aaKnown RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 KLHL26Q53HC5 615 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 EIPR1Q53HC9 387 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 RUNDC3AQ59EK9 446 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 WIPI1Q5MNZ9 446 aaPredicted RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 GKAP1Q5VSY0 366 aaPredicted RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 FRRS1Q6ZNA5 592 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 LRRC74BQ6ZQY2 392 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 MTERF4Q7Z6M4 381 aaKnown RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 YRDCQ86U90 279 aaKnown RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 SPPL2CQ8IUH8 684 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 POU5F2Q8N7G0 328 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 FAM83FQ8NEG4 500 aaPredicted RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 OR2M3Q8NG83 312 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 NEIL3Q8TAT5 605 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 SH3YL1Q96HL8 342 aaPredicted RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 ANKRD27Q96NW4 1050 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 CCDC106Q9BWC9 280 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 SAP130Q9H0E3 1048 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 CACYBPQ9HB71 228 aaKnown RBP11.3□□□□□ -0.6
DDX56-209ENST00000473924 PLSCR2Q9NRY7 297 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 GID8Q9NWU2 228 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 TAS2R10Q9NYW0 307 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 SH3BGRL2Q9UJC5 107 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 ACAD8Q9UKU7 415 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 HRH3Q9Y5N1 445 aa11.3□□□□□ -0.6
DDX56-209ENST00000473924 NCKAP5O14513 1909 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 C15orf38-AP3S2A0A0A6YYH1 394 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 TRGV8A0A0C4DH27 118 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 SERINC4A6NH21 518 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 FAM47E-STBD1D6RA91 191 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 NPIPB9F8W1W9 429 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 AQP7O14520 342 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 ADAM10O14672 748 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 SHOX2O60902 331 aaPredicted RBP11.29□□□□□ -0.6
DDX56-209ENST00000473924 TNFRSF21O75509 655 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 UGT2B17O75795 530 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 DCTN3O75935 186 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 ZIC2O95409 532 aaPredicted RBP11.29□□□□□ -0.6
DDX56-209ENST00000473924 NUDT14O95848 222 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 FAM107AO95990 144 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 TPOP07202 933 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 CHRM4P08173 479 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 NUDT7P0C024 238 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 TFPTP0C1Z6 253 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 UBL4AP11441 157 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 GPX2P18283 190 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 HK1P19367 917 aa11.29□□□□□ -0.6
DDX56-209ENST00000473924 ENDOUP21128 410 aaKnown RBP11.29□□□□□ -0.6
DDX56-209ENST00000473924 MSX1P28360 303 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms