RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SIRT6Q8N6T7 355 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 ZNF614Q8N883 585 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 Q8N9G6 341 aaPredicted RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 OR51G2Q8NGK0 314 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 KATNB1Q9BVA0 655 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 A0A075B6Q4 140 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 SLC1A3P43003 542 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 GCGRP47871 477 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 PLAURQ03405 335 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 FZD5Q13467 585 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZNF628Q5EBL2 1059 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 C3orf38Q5JPI3 329 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 AADACL4Q5VUY2 407 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 RBM12BQ8IXT5 1001 aaKnown RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 LINC00471Q8N535 108 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 OR4N2Q8NGD1 307 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 NT5CQ8TCD5 201 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 SECISBP2Q96T21 854 aaKnown RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 MALT1Q9UDY8 824 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 PAIP2BQ9ULR5 123 aaKnown RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 HRKO00198 91 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 TFECO14948 347 aaPredicted RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 KIAA1024LP59773 190 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 EEF1A1P68104 462 aaKnown RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 BNC1Q01954 994 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 RUNX1T1Q06455 604 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 DECR1Q16698 335 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ARHGAP11BQ3KRB8 267 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 MINDY4Q4G0A6 757 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZNF620Q6ZNG0 422 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 MBOAT2Q6ZWT7 520 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 USP53Q70EK8 1073 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 MRGPREQ86SM8 312 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 SLC22A18Q96BI1 424 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZFYVE21Q9BQ24 234 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ARHGAP9Q9BRR9 750 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZNF649Q9BS31 505 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 CRNNQ9UBG3 495 aaPredicted RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 CPNE7Q9UBL6 633 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 PCOLCE2Q9UKZ9 415 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 CBLCQ9ULV8 474 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZNF232Q9UNY5 417 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 KDM4EB2RXH2 506 aaPredicted RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 KLF4O43474 513 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 RFPL3O75679 317 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 TLX1P31314 330 aaPredicted RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 GABRA3P34903 492 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 IFNGR2P38484 337 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 NR4A2P43354 598 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZNF155Q12901 538 aaPredicted RBP17.75■□□□□ 0.43
VIM-203ENST00000469543 KIR2DS3Q14952 304 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 KCNJ8Q15842 424 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 PLK5Q496M5 336 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 DCST2Q5T1A1 773 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 TMEM184AQ6ZMB5 413 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 ZNF485Q8NCK3 441 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 GRHL3Q8TE85 626 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 UBQLN3Q9H347 655 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 CLDND1Q9NY35 253 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 CALML5Q9NZT1 146 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 COMMD3Q9UBI1 195 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 FBXL4Q9UKA2 621 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 CLCA2Q9UQC9 943 aa17.75■□□□□ 0.43
VIM-203ENST00000469543 HRO43593 1189 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 PTTG1O95997 202 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 CLUP10909 449 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 FPR3P25089 353 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 ERV3-1Q14264 604 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 PRAMEF8Q5VWM4 474 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 PRAMEF7Q5VXH5 474 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 FAM131AQ6UXB0 335 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 THSD4Q6ZMP0 1018 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 TRIM69Q86WT6 500 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 IL17RDQ8NFM7 739 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 DIRAS2Q96HU8 199 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 FGF20Q9NP95 211 aaPredicted RBP17.74■□□□□ 0.43
VIM-203ENST00000469543 USP36Q9P275 1121 aaKnown RBP17.74■□□□□ 0.43
VIM-203ENST00000469543 CD8B2A6NJW9 211 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 CYR61O00622 381 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 CD8BP10966 210 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 NDUFS1P28331 727 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 RFX2P48378 723 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 FHL5Q5TD97 284 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 RNLSQ5VYX0 342 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 KLBQ86Z14 1044 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 COX18Q8N8Q8 333 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 OR51A7Q8NH64 312 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 SLC37A2Q8TED4 501 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 SPRYD4Q8WW59 207 aaPredicted RBP17.74■□□□□ 0.43
VIM-203ENST00000469543 RSC1A1Q92681 617 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 RERGQ96A58 199 aaPredicted RBP17.74■□□□□ 0.43
VIM-203ENST00000469543 PTCHD1Q96NR3 888 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 CDCA3Q99618 268 aaPredicted RBP17.74■□□□□ 0.43
VIM-203ENST00000469543 TRIM45Q9H8W5 580 aaPredicted RBP17.74■□□□□ 0.43
VIM-203ENST00000469543 C2orf42Q9NWW7 574 aa17.74■□□□□ 0.43
VIM-203ENST00000469543 A0A1W2PQ09 198 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 A8MV72 311 aaPredicted RBP17.73■□□□□ 0.43
VIM-203ENST00000469543 GNB5O14775 395 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 REM1O75628 298 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 GABRG2P18507 467 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms