RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 COX15Q7KZN9 410 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 TIPARPQ7Z3E1 657 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 C6orf120Q7Z4R8 191 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC44A2Q8IWA5 706 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ZNF595Q8IYB9 648 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 LRRC25Q8N386 305 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 GALNT15Q8N3T1 639 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 NATD1Q8N6N6 113 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 AMER2Q8N7J2 671 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 OR8J2Q8NGG1 315 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 OR9A2Q8NGT5 310 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 STT3BQ8TCJ2 826 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 METTL21AQ8WXB1 218 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ADAMTS14Q8WXS8 1223 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 TSLPQ969D9 159 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 TMEM125Q96AQ2 219 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 MCUR1Q96AQ8 359 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 NACC2Q96BF6 587 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 FAM120BQ96EK7 910 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ZBED6CLQ96FA7 236 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 OTUB1Q96FW1 271 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 AURKBQ96GD4 344 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 C16orf58Q96GQ5 468 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 NAF1Q96HR8 494 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 AMDHD1Q96NU7 426 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 MOGAT1Q96PD6 335 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CGREF1Q99674 301 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 HOPXQ9BPY8 73 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ECSITQ9BQ95 431 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC35A5Q9BS91 424 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 MLST8Q9BVC4 326 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CADM1Q9BY67 442 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 PAIP1Q9H074 479 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 TMPRSS5Q9H3S3 457 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CXorf36Q9H7Y0 433 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 NANOGQ9H9S0 305 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CLK4Q9HAZ1 481 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 C3orf14Q9HBI5 128 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ADAP2Q9NPF8 381 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 MKKSQ9NPJ1 570 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 EQTNQ9NQ60 294 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC22A11Q9NSA0 550 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC6A13Q9NSD5 602 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 TMEM45AQ9NWC5 275 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 FAM120CQ9NX05 1096 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CMTM6Q9NX76 183 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 TAS2R9Q9NYW1 312 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 VAPAQ9P0L0 249 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CTSFQ9UBX1 484 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ZNF282Q9UDV7 671 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 BTNL2Q9UIR0 455 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 C3orf18Q9UK00 162 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 PADI1Q9ULC6 663 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 ERVK-11Q9UQG0 969 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 FARSAQ9Y285 508 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 PTRH2Q9Y3E5 179 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 A0A0C4DFX4 3053 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 SPTBP11277 2137 aa3.79□□□□□ -1.8
TMEM39A-204ENST00000468545 CACNA1HO95180 2353 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ZFHX2Q9C0A1 2572 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MUC3AQ02505 3323 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TRGV11A0A075B6L2 103 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RNF103-CHMP3A0A140T963 221 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TRABD2BA6NFA1 517 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 C17orf105B2RV13 164 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 IDSB3KWA1 339 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 EMC8O43402 210 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 PRKNO60260 465 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RAD1O60671 282 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TBX19O60806 448 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 HNRNPCL1O60812 293 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CNOT3O75175 753 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ALOX12BO75342 701 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CIB2O75838 187 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 KRT75O95678 551 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ADH4P08319 380 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CT62P0C5K7 136 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC35E2P0CK97 266 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OR12D1P0DN82 309 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 NCK1P16333 377 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MATN1P21941 496 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 IL10P22301 178 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OTX2P32243 289 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RORAP35398 523 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CPOXP36551 454 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 DLSTP36957 453 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 FOLR3P41439 243 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RFX3P48380 749 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 PRIM2P49643 509 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 UCP3P55916 312 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 HSD17B7P56937 341 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 C21orf58P58505 322 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RPS18P62269 152 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RPS15P62841 145 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 BLOC1S1P78537 153 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RHAGQ02094 409 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 LIPEQ05469 1076 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 EEF1A2Q05639 463 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 LRRC74AQ0VAA2 488 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms