RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RNF115Q9Y4L5 304 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 TBL2Q9Y4P3 447 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 PPIAL4AQ9Y536 164 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 ADGRL3Q9HAR2 1447 aa4.38□□□□□ -1.71
CCDC88A-210ENST00000468534 A0A087WYN8 130 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 GNG14A0A1W2PPG7 69 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RNF222A6NCQ9 220 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SMIM23A6NLE4 172 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 E9PQ18 207 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RGS14O43566 566 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SNAI2O43623 268 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 GMNNO75496 209 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF432O94892 652 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 FADS2O95864 444 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 MT-CYBP00156 380 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 GH2P01242 217 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 TNNC2P02585 160 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RPN2P04844 631 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CSN3P07498 182 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 NUDT17P0C025 328 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 TNNI1P19237 187 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 DTYMKP23919 212 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SERPINB1P30740 379 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 OR1E1P30953 314 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 HNRNPH1P31943 449 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CASP14P31944 242 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC6A8P48029 635 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 NPBWR2P48146 333 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RFX5P48382 616 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 HNRNPH2P55795 449 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CLDN18P56856 261 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CLDN2P57739 230 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ERVS71-1P61550 626 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 PITPNAQ00169 270 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SERTAD2Q14140 314 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC15A2Q16348 729 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 IMPG1Q17R60 797 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ARL13AQ5H913 290 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 C6orf141Q5SZD1 244 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 OR2A2Q6IF42 318 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 C11orf63Q6NUN7 778 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 KCNIP4Q6PIL6 250 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF546Q86UE3 836 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF100Q8IYN0 542 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 MARVELD2Q8N4S9 558 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 C1orf52Q8N6N3 182 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 NATD1Q8N6N6 113 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF611Q8N823 705 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SYT14Q8NB59 555 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 NECAP1Q8NC96 275 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ADPRHL1Q8NDY3 354 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 OR7G2Q8NG99 324 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 NUBPLQ8TB37 319 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 WDR20Q8TBZ3 569 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 HM13Q8TCT9 377 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 WFIKKN2Q8TEU8 576 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 GDPD5Q8WTR4 605 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 GTF3AQ92664 365 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RPL3LQ92901 407 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SMARCD2Q92925 531 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 IGSF8Q969P0 613 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CPNE4Q96A23 557 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 PINX1Q96BK5 328 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 MOB3AQ96BX8 217 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RNF145Q96MT1 663 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 PRMT1Q99873 361 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 DHRS9Q9BPW9 319 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF251Q9BRH9 671 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CBWD1Q9BRT8 395 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 LMF2Q9BU23 707 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC39A8Q9C0K1 460 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 WDR54Q9H977 334 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC28A3Q9HAS3 691 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 MYNNQ9NPC7 610 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 ASCL3Q9NQ33 180 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 TAS2R9Q9NYW1 312 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 IFNKQ9P0W0 207 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 MYEF2Q9P2K5 600 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 UVRAGQ9P2Y5 699 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 POLKQ9UBT6 870 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC25A13Q9UJS0 675 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 STARD10Q9Y365 291 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CLIC4Q9Y696 253 aa4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 RPAP1Q9BWH6 1393 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-210ENST00000468534 CPED1A4D0V7 1026 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 OR6C68A6NDL8 312 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GAGE12JA6NER3 117 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 A8MX80 341 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 C2orf74A8MZ97 194 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MIF4GDA9UHW6 222 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM114B3SHH9 223 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MS4A18H0YCH9 400 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 I6L893 689 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 LAD1O00515 517 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CYB561D2O14569 222 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 B4GALT5O43286 388 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 LATO43561 262 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 SPRY3O43610 288 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PI15O43692 258 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 OR10H3O60404 316 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms