RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 ACP2P11117 423 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 SDC1P18827 310 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 TBXA2RP21731 343 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 PRPH2P23942 346 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 MAP3K8P41279 467 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 CCT5P48643 541 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 MANFP55145 182 aaKnown RBP18.9■□□□□ 0.62
COL9A3-207ENST00000467819 LIPMQ5VYY2 423 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 FIGNL1Q6PIW4 674 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 C22orf34Q6ZV56 151 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 LRRC75A-AS1Q8N1F1 130 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 CDRT4Q8N9R6 151 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 OR2T11Q8NH01 316 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 OR4C3Q8NH37 302 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 CEP70Q8NHQ1 597 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 KIF18AQ8NI77 898 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 PPCDCQ96CD2 204 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 PERPQ96FX8 193 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 MARK4Q96L34 752 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 NPAS1Q99742 590 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 SH3BP4Q9P0V3 963 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 STOML1Q9UBI4 398 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 EMC9Q9Y3B6 208 aa18.9■□□□□ 0.62
COL9A3-207ENST00000467819 ALG1L2C9J202 215 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 COPEO14579 308 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 ZNF17P17021 662 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 EFNA1P20827 205 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-207ENST00000467819 CRHR1P34998 444 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 CTBP2P56545 445 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 RPL38P63173 70 aaKnown RBP18.89■□□□□ 0.61
COL9A3-207ENST00000467819 OCRLQ01968 901 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 ZAR1Q86SH2 424 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 OR10D3Q8NH80 312 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 HOXB13Q92826 284 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-207ENST00000467819 ZBED6CLQ96FA7 236 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-207ENST00000467819 OTUB1Q96FW1 271 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-207ENST00000467819 SH3YL1Q96HL8 342 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-207ENST00000467819 Q96MF0 132 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 MS4A4EQ96PG1 132 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 CCT7Q99832 543 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 REEP4Q9H6H4 257 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 BAIAP2L1Q9UHR4 511 aa18.89■□□□□ 0.61
COL9A3-207ENST00000467819 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 NPIPB8E9PQR5 432 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 H7C1Q1 480 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 KIF2AO00139 706 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 AZIN1O14977 448 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 CXCL13O43927 109 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 KCNK2O95069 426 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 LOXP28300 417 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 SLC18A2Q05940 514 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 DUSP5Q16690 384 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 Q6ZSR9 355 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 YTHDF3Q7Z739 585 aaKnown RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 C10orf107Q8IVU9 208 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 WDR75Q8IWA0 830 aaKnown RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 CIARTQ8N365 385 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 SLC16A11Q8NCK7 471 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 OR6K3Q8NGY3 331 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 UBLCP1Q8WVY7 318 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 GIMAP5Q96F15 307 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 ZNF764Q96H86 408 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 FCRL1Q96LA6 429 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 RNF145Q96MT1 663 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 IQCGQ9H095 443 aaKnown RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 TMEM185BQ9H7F4 350 aa18.88■□□□□ 0.61
COL9A3-207ENST00000467819 MCTS1Q9ULC4 181 aaKnown RBP18.88■□□□□ 0.61
COL9A3-207ENST00000467819 ZANQ9Y493 2812 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 A0A087WZY1 265 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 A0A1W2PRB8 838 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 HEXAP06865 529 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 LINC00032P0C843 101 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 NEFHP12036 1026 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 ZNF41P51814 821 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 CTU2Q2VPK5 515 aaKnown RBP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 GALNTL6Q49A17 601 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 RFTN2Q52LD8 501 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 MFSD12Q6NUT3 480 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 C20orf204Q6ZNR8 217 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 C4orf33Q8N1A6 199 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 GTPBP8Q8N3Z3 284 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 COX18Q8N8Q8 333 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 EPS8L3Q8TE67 593 aaKnown RBP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 JADE3Q92613 823 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 CAVIN3Q969G5 261 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 C16orf58Q96GQ5 468 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 GMPPAQ96IJ6 420 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-207ENST00000467819 ADGRG7Q96K78 797 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 COX4I2Q96KJ9 171 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 KLHDC3Q9BQ90 382 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 TUBB1Q9H4B7 451 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 MED17Q9NVC6 651 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 FBXO34Q9NWN3 711 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 JMJD1CQ15652 2540 aa18.87■□□□□ 0.61
COL9A3-207ENST00000467819 USF3Q68DE3 2245 aa18.86■□□□□ 0.61
COL9A3-207ENST00000467819 FREM1Q5H8C1 2179 aa18.86■□□□□ 0.61
COL9A3-207ENST00000467819 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-207ENST00000467819 TNFSF11O14788 317 aa18.86■□□□□ 0.61
COL9A3-207ENST00000467819 SMAD7O15105 426 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms