RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PPP1R3BQ86XI6 285 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 ZNF679Q8IYX0 411 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 PROKR2Q8NFJ6 384 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 TECTBQ96PL2 329 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 SLC5A7Q9GZV3 580 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 PCDHGC4Q9Y5F7 938 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 HOXB2P14652 356 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 ZNF25P17030 456 aaPredicted RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 SLC17A1Q14916 467 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 MORN1Q5T089 497 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 NADSYN1Q6IA69 706 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 LFNGQ8NES3 379 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 OR56B2PQ8NGI1 322 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 KLHL15Q96M94 604 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 ALKBH4Q9NXW9 302 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 FBXW2Q9UKT8 454 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 SLC22A31A6NKX4 558 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 LEUTXA8MZ59 168 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 B4DXG7 233 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 PI15O43692 258 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 PTBP3O95758 552 aaKnown RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 SYPP08247 313 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 HSD3B2P26439 372 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 CHRNA4P43681 627 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 MEF2DQ14814 521 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 SPIN4Q56A73 249 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 PDZD11Q5EBL8 140 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 C18orf63Q68DL7 685 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 C5orf46Q6UWT4 87 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 NPAS3Q8IXF0 933 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 CDH26Q8IXH8 852 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 OR6F1Q8NGZ6 308 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 PRRT1Q99946 306 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 MOB1AQ9H8S9 216 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 OSER1Q9NX31 292 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 VPS29Q9UBQ0 182 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 CST3P01034 146 aaPredicted RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 CCKBRP32239 447 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 CNR2P34972 360 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 OR2B8PP59922 312 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 HSPB3Q12988 150 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 DPYSL2Q16555 572 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 CHRFAM7AQ494W8 412 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 SLC22A15Q8IZD6 547 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 ZNF596Q8TC21 504 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 NDRG1Q92597 394 aaKnown RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 ZNF582Q96NG8 517 aaPredicted RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 CRLF2Q9HC73 371 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 SARDHQ9UL12 918 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 FZD10Q9ULW2 581 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 A0A0A6YYH2 397 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 A6NJ64 397 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 RAD1O60671 282 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 HBE1P02100 147 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 EFNA1P20827 205 aaPredicted RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 RBP2P50120 134 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 REEP3Q6NUK4 255 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 ZFP41Q8N8Y5 198 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 ZMIZ2Q8NF64 920 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 IL17RDQ8NFM7 739 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 JSRP1Q96MG2 331 aaPredicted RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 OSMP13725 252 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 ATP5A1P25705 553 aaKnown RBP12.57□□□□□ -0.4
USP40-208ENST00000450966 CASP9P55211 416 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 B2MP61769 119 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 IRF4Q15306 451 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 IQCJQ1A5X6 159 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 C12orf40Q86WS4 652 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 NXPE1Q8N323 547 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 KLHDC1Q8N7A1 406 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 OR2T33Q8NG76 320 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 DYNC2LI1Q8TCX1 351 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 FOXJ1Q92949 421 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 CMTM7Q96FZ5 175 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 GORASP2Q9H8Y8 452 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 POPDC3Q9HBV1 291 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 SNED1Q8TER0 1413 aa12.57□□□□□ -0.4
USP40-208ENST00000450966 TMEM235A6NFC5 223 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 TMEM150CB9EJG8 249 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 GAPDHSO14556 408 aaPredicted RBP12.56□□□□□ -0.4
USP40-208ENST00000450966 FFAR2O15552 330 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ZNF208O43345 1280 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 PCDH7O60245 1069 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 PREPP48147 710 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ZNF33AQ06730 810 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 FABP9Q0Z7S8 132 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SHFQ7M4L6 423 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 NUP54Q7Z3B4 507 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 HORMAD2Q8N7B1 307 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ZCCHC10Q8TBK6 192 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 HIST1H2AAQ96QV6 131 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 DERL2Q9GZP9 239 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SUV39H2Q9H5I1 410 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 IL21RQ9HBE5 538 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 TAS2R16Q9NYV7 291 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 CD207Q9UJ71 328 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ZNF44P15621 663 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 EDNRBP24530 442 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 MRPL19P49406 292 aaKnown RBP12.56□□□□□ -0.4
USP40-208ENST00000450966 SLC9B2Q86UD5 537 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms