RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 TOX3O15405 576 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 INSIG1O15503 277 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 EMC8O43402 210 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LATO43561 262 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LDB2O43679 373 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 GPR137BO60478 399 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 RNASEH1O60930 286 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 STK17BO94768 372 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 VAPBO95292 243 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 EML2O95834 649 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 HPRP00739 348 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PIGRP01833 764 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 VTNP04004 478 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 F7P08709 466 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SLC35G4P0C7Q5 338 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TRIM49P0CI25 452 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TRIM49CP0CI26 452 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CYP11B1P15538 503 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TBXA2RP21731 343 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 BGNP21810 368 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 UGT1A4P22310 534 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PPP2R1BP30154 601 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 MMP12P39900 470 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 EIF2S3P41091 472 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ACTR1BP42025 376 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CSNK1DP48730 415 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TGM4P49221 684 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 STK19P49842 368 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 NOVA1P51513 510 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 VAMP7P51809 220 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 GTF2A1P52655 376 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 HMGCS2P54868 508 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 UCNP55089 124 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CLDN17P56750 224 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CD81P60033 236 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 RPS6P62753 249 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 KCNJ2P63252 427 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CDKL1Q00532 357 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 IL9RQ01113 521 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SP3Q02447 781 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SRYQ05066 204 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SLAMF1Q13291 335 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 GK3PQ14409 553 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 MEF2DQ14814 521 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SLC5A12Q1EHB4 618 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 VPS26BQ4G0F5 336 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 FAM69BQ5VUD6 431 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF776Q68DI1 518 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 STUMQ69YW2 141 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 OR4A47Q6IF82 309 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF425Q6IV72 752 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CLEC18BQ6UXF7 455 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CEACAM20Q6UY09 585 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LINGO4Q6UY18 593 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 DPY19L2P2Q6ZN68 376 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LRRC74BQ6ZQY2 392 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 DHDDSQ86SQ9 333 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 RANBP3LQ86VV4 465 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PALB2Q86YC2 1186 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ERI1Q8IV48 349 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 MB21D2Q8IYB1 491 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 RBFAQ8N0V3 343 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LIX1Q8N485 282 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SPEM1Q8N4L4 309 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 MARVELD2Q8N4S9 558 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CYB561A3Q8NBI2 242 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 INO80EQ8NBZ0 244 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CLEC18CQ8NCF0 446 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 C19orf18Q8NEA5 215 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 NFAM1Q8NET5 270 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 OR4A4PQ8NGN8 299 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 THAP6Q8TBB0 222 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 NANPQ8TBE9 248 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TEX47Q8TBZ9 253 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 HCAR2Q8TDS4 363 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TMEM239Q8WW34 195 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PHF21AQ96BD5 680 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 B3GALT6Q96L58 329 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SH2D3AQ9BRG2 576 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF251Q9BRH9 671 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 NAT9Q9BTE0 207 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 DUSP16Q9BY84 665 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CIPCQ9C0C6 399 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SRRQ9GZT4 340 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LHPPQ9H008 270 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SEMA6AQ9H2E6 1030 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 HIPK2Q9H2X6 1198 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 DPEP2Q9H4A9 486 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TUBB1Q9H4B7 451 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 C5orf66Q9H5L9 145 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TRIM45Q9H8W5 580 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 VIPAS39Q9H9C1 493 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SLC52A3Q9NQ40 469 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 CNGB3Q9NQW8 809 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 C8orf4Q9NR00 106 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 MYEF2Q9P2K5 600 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ABCD2Q9UBJ2 740 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PLEKHB1Q9UF11 243 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 LNPEPQ9UIQ6 1025 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms