RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	NPIPB9	F8W1W9	429 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	SNPH	O15079	494 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	NDUFB5	O43674	189 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	HNRNPCL1	O60812	293 aa	Known RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	TRIM3	O75382	744 aa	Predicted RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	ZIC2	O95409	532 aa	Predicted RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	HNRNPCL4	P0DMR1	293 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	ZNF24	P17028	368 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	PSME3	P61289	254 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	PMP22	Q01453	160 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	CHRNE	Q04844	493 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	C17orf67	Q0P5P2	114 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	SCARB2	Q14108	478 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	ZNF141	Q15928	474 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	SOWAHC	Q53LP3	525 aa	Predicted RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	AP1AR	Q63HQ0	302 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	REEP3	Q6NUK4	255 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	C8orf82	Q6P1X6	216 aa	Predicted RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	ERICH5	Q6P6B1	374 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	OLIG3	Q7RTU3	272 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	SLC22A16	Q86VW1	577 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	PEX5L	Q8IYB4	626 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	PGAM4	Q8N0Y7	254 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	C10orf111	Q8N326	155 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	OR1J4	Q8NGS1	313 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	NFKBID	Q8NI38	313 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	BBS10	Q8TAM1	723 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	TREX2	Q9BQ50	279 aa	Predicted RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	RUBCNL	Q9H714	662 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	MTHFD2L	Q9H903	347 aa	Predicted RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	ZFP64	Q9NPA5	681 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	SPAG4	Q9NPE6	437 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	SUCO	Q9UBS9	1254 aa	Known RBP	12.03	□□□□□ -0.48
SF1-206	ENST00000413725	DTNA	Q9Y4J8	743 aa		12.03	□□□□□ -0.48
SF1-206	ENST00000413725	FAM220BP	B1ANY3	271 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725		B2RBV5	119 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	GNB5	O14775	395 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	TFEC	O14948	347 aa	Predicted RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	DNAJA2	O60884	412 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	UGT2B17	O75795	530 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	PDE9A	O76083	593 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	UBOX5	O94941	541 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	ANGPTL1	O95841	491 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	DBI	P07108	87 aa	Known RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	RFC3	P40938	356 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	SLC7A2	P52569	658 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	GAS1	P54826	345 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	ALDH6A1	Q02252	535 aa	Known RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	FOXO1	Q12778	655 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	MAPK11	Q15759	364 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	ADRM1	Q16186	407 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	KLHL26	Q53HC5	615 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	PDZK1	Q5T2W1	519 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	INTS11	Q5TA45	600 aa	Known RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	TIGD3	Q6B0B8	471 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	MARCH3	Q86UD3	253 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	KRT73	Q86Y46	540 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	PTOV1	Q86YD1	416 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	SLC15A3	Q8IY34	581 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	ZZZ3	Q8IYH5	903 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	CISD2	Q8N5K1	135 aa	Known RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	GATS	Q8NAP1	163 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	HIPK4	Q8NE63	616 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	OR2T12	Q8NG77	320 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	PHOSPHO1	Q8TCT1	267 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	NTNG2	Q96CW9	530 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	REXO5	Q96IC2	774 aa	Known RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	TAAR6	Q96RI8	345 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	TTTY12	Q9BZ98	90 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	PIF1	Q9H611	641 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	BCL2L10	Q9HD36	194 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	AGPAT4	Q9NRZ5	378 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	12.02	□□□□□ -0.49
SF1-206	ENST00000413725	ADA2	Q9NZK5	511 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	DSPP	Q9NZW4	1301 aa		12.02	□□□□□ -0.49
SF1-206	ENST00000413725	C2orf72	A6NCS6	295 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	SERINC4	A6NH21	518 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	AGAP5	A6NIR3	686 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	LRRC3C	A6NJW4	275 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	GTPBP1	O00178	669 aa	Known RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	NME4	O00746	187 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	GLS	O94925	669 aa	Predicted RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	PGM3	O95394	542 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	ETS2	P15036	469 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	IL7R	P16871	459 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	GDF1	P27539	372 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	PCGF2	P35227	344 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	GZMM	P51124	257 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	EEFSEC	P57772	596 aa	Known RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	PPIA	P62937	165 aa	Known RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	SLC25A3	Q00325	362 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	LARS2	Q15031	903 aa	Known RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	INPP5J	Q15735	1006 aa	Predicted RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	HYAL4	Q2M3T9	481 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	VMAC	Q2NL98	169 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	12.01	□□□□□ -0.49
SF1-206	ENST00000413725	APOOL	Q6UXV4	268 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	IFNE	Q86WN2	208 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	CALHM3	Q86XJ0	350 aa		12.01	□□□□□ -0.49
SF1-206	ENST00000413725	PLCZ1	Q86YW0	608 aa		12.01	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms