RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ARSIQ5FYB1 569 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC35F2Q8IXU6 374 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC24A4Q8NFF2 622 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 ACKR4Q9NPB9 350 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FUOMA2VDF0 154 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 LRRC10BA6NIK2 292 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 A8MT66 165 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CRHBPP24387 322 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 G0S2P27469 103 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 HTR3AP46098 478 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SRPXP78539 464 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CRYZQ08257 329 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM162BQ5T6X4 162 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM217AQ8IXS0 508 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 OR2M7Q8NG81 312 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 OR4N2Q8NGD1 307 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 NDRG1Q92597 394 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SCPEP1Q9HB40 452 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FBXL4Q9UKA2 621 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 USP32Q8NFA0 1604 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 CDHR4A6H8M9 788 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 DAP3P51398 398 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 HNRNPDQ14103 355 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 SHEQ5VZ18 495 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 LRRC25Q8N386 305 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 A0A0B4J2A0 478 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 ATP4BP51164 291 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 GLO1Q04760 184 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 PLCXD3Q63HM9 321 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 NUP43Q8NFH3 380 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 OR1S2Q8NGQ3 325 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF160Q9HCG1 818 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 SHPKQ9UHJ6 478 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 UGT2A1Q9Y4X1 527 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 CT45A10P0DMU9 189 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 GABRA4P48169 554 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 TMEM97Q5BJF2 176 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 MAP1SQ66K74 1059 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 BTNL8Q6UX41 500 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 RNF111Q6ZNA4 994 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 CD244Q9BZW8 370 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 MTCH1Q9NZJ7 389 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 TUSC2O75896 110 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 DLX5P56178 289 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 ACTBL2Q562R1 376 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 LRRC55Q6ZSA7 311 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC35F3Q8IY50 421 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 MR1Q95460 341 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 PBX4Q9BYU1 374 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 NIT2Q9NQR4 276 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 PRTFDC1Q9NRG1 225 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 LOC102723971A0A1B0GUV8 181 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 XRCC3O43542 346 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 PRICKLE3O43900 615 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 SIRPB2Q5JXA9 342 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 OR4F6Q8NGB9 312 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 FRS2Q8WU20 508 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 ZBTB8AQ96BR9 441 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 OSBPL2Q9H1P3 480 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 CEPT1Q9Y6K0 416 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 LOC102725191A0A1B0GVB3 256 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM221BA6H8Z2 402 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 LDB2O43679 373 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 MT-ND4LP03901 98 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 ALPIP09923 528 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 PABPC4LP0CB38 370 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 MGAT3Q09327 533 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 SF3B4Q15427 424 aaKnown RBP eCLIP12.65□□□□□ -0.381e-6■■■■□ 25.4
CCDC88A-204ENST00000413716 CPNE8Q86YQ8 564 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 OR5L2Q8NGL0 311 aa12.65□□□□□ -0.38
CCDC88A-204ENST00000413716 PPP5D1E7EU14 171 aa12.65□□□□□ -0.39
CCDC88A-204ENST00000413716 MT-ND4P03905 459 aa12.65□□□□□ -0.39
CCDC88A-204ENST00000413716 JUPP14923 745 aa12.65□□□□□ -0.39
CCDC88A-204ENST00000413716 CSN1S1P47710 185 aa12.65□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC18A1P54219 525 aa12.65□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF417Q8TAU3 575 aa12.65□□□□□ -0.39
CCDC88A-204ENST00000413716 RCCD1A6NED2 376 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 TMEM233B4DJY2 109 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 H7BYZ3 331 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR39O43194 453 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 EEDO75530 441 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 JRKO75564 520 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CNR1P21554 472 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ETV4P43268 484 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CERS5Q8N5B7 392 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 OR9A1PQ8NGU1 263 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SHDQ96IW2 340 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 BABAM2Q9NXR7 383 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 EHFQ9NZC4 300 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 EBLN1P0CF75 366 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 EBPQ15125 230 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CORO2AQ92828 525 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ARV1Q9H2C2 271 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 FABP1P07148 127 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SERPINA11Q86U17 422 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GON7Q9BXV9 100 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GMEB2Q9UKD1 530 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 HNRNPA2B1P22626 353 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GIFP27352 417 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 RAC1P63000 192 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms