RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 RPS4Y1P22090 263 aaKnown RBP16.58■□□□□ 0.24
SDC1-203ENST00000403076 PRKAR1BP31321 381 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 EVI2BP34910 448 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 KCNJ5P48544 419 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 CRYBA2P53672 197 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 KCNJ10P78508 379 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 MFAP5Q13361 173 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 CCNIQ14094 377 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 DUSP7Q16829 419 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 SLC22A10Q63ZE4 541 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 BORAQ6PGQ7 559 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 ENPP6Q6UWR7 440 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 ZNF836Q6ZNA1 936 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 RTL4Q6ZR62 310 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 MARCH3Q86UD3 253 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 C10orf67Q8IYJ2 551 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 GATSQ8NAP1 163 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 POGLUT1Q8NBL1 392 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 PHOSPHO1Q8TCT1 267 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 OIT3Q8WWZ8 545 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 POP5Q969H6 163 aaKnown RBP16.58■□□□□ 0.24
SDC1-203ENST00000403076 PYURFQ96I23 114 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 SGCZQ96LD1 299 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 DOHHQ9BU89 302 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 UGT2B28Q9BY64 529 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 KLHL28Q9NXS3 571 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 LRFN1Q9P244 771 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 TCRBV5S2A0A599 114 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 PRAMEF25A6NGN4 478 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 SERINC4A6NH21 518 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 CLDN24A6NM45 220 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 NDUFB5O43674 189 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 FADS1O60427 444 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 FESP07332 822 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 NGFRP08138 427 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 CD247P20963 164 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 CD96P40200 585 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 TUBA3CQ13748 450 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 KLHL26Q53HC5 615 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 EIPR1Q53HC9 387 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 MRPL2Q5T653 305 aaKnown RBP16.57■□□□□ 0.24
SDC1-203ENST00000403076 TUBA3EQ6PEY2 450 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 DHRS4L2Q6PKH6 230 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 VTCN1Q7Z7D3 282 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 GRHL3Q8TE85 626 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 ANAPC2Q9UJX6 822 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 ABCG2Q9UNQ0 655 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 AURKCQ9UQB9 309 aa16.57■□□□□ 0.24
SDC1-203ENST00000403076 RRP15Q9Y3B9 282 aaKnown RBP16.57■□□□□ 0.24
SDC1-203ENST00000403076 TCRBV3S1A0A5B6 114 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 DHRS12A0PJE2 317 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 ALG1L2C9J202 215 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CEACAM4O75871 244 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CYP7B1O75881 506 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CSTAP01040 98 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 P04436 131 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 UMPSP11172 480 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 PSMA4P25789 261 aaKnown RBP16.56■□□□□ 0.24
SDC1-203ENST00000403076 ARG2P78540 354 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 RHDQ02161 417 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CHRNB3Q05901 458 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 FGFBP1Q14512 234 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 GLIPR1L2Q4G1C9 344 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 FAM98BQ52LJ0 330 aaKnown RBP16.56■□□□□ 0.24
SDC1-203ENST00000403076 IFI44LQ53G44 452 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 APOOLQ6UXV4 268 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CLIP4Q8N3C7 705 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 FAM86B1Q8N7N1 296 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 GPR32P1Q8NGA4 272 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CANT1Q8WVQ1 401 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 SLC47A1Q96FL8 570 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 SECISBP2Q96T21 854 aaKnown RBP16.56■□□□□ 0.24
SDC1-203ENST00000403076 TIMMDC1Q9NPL8 285 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 SH3GLB1Q9Y371 365 aa16.56■□□□□ 0.24
SDC1-203ENST00000403076 CHCHD2Q9Y6H1 151 aaPredicted RBP16.56■□□□□ 0.24
SDC1-203ENST00000403076 A0A1W2PQD3 144 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 SYT5O00445 386 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 CDK2AP1O14519 115 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 ENTPD5O75356 428 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 ANGPTL1O95841 491 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 GPIP06744 558 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 ENDOUP21128 410 aaKnown RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 CASP3P42574 277 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 EEF1A1P68104 462 aaKnown RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 ELF3P78545 371 aaPredicted RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 OR1C1Q15619 314 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 TBR1Q16650 682 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 ZSWIM7Q19AV6 140 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 PRAMEF20Q5VT98 475 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 RNF220Q5VTB9 566 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 BICRALQ6AI39 1079 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 SPINK14Q6IE38 97 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 CMIPQ8IY22 773 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 KDF1Q8NAX2 398 aaPredicted RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 GOLM1Q8NBJ4 401 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 VANGL1Q8TAA9 524 aaPredicted RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 PAQR8Q8TEZ7 354 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 STMN2Q93045 179 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 OSBPL11Q9BXB4 747 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.55■□□□□ 0.241e-6■■□□□ 13.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms