RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 MTCP1P56278 107 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 VWA2Q5GFL6 755 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 LETMD1Q6P1Q0 360 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 BARD1Q99728 777 aaKnown RBP4.65□□□□□ -1.67
PCDH9-201ENST00000377861 CNR2P34972 360 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 PRKXP51817 358 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 RAPSNQ13702 412 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 UBE2NLQ5JXB2 153 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 LAMP5Q9UJQ1 280 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 KCND3Q9UK17 655 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 RGPD1P0DJD0 1748 aa4.65□□□□□ -1.67
PCDH9-201ENST00000377861 SMAD6O43541 496 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TFPTP0C1Z6 253 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 BPIP17213 487 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 HOXB9P17482 250 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SUMO3P55854 103 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 OR5L1Q8NGL2 311 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF416Q9BWM5 594 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 A0A0B4J2A0 478 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SLC6A12P48065 614 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 ACTR1AP61163 376 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 APH1BQ8WW43 257 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TEAD3Q99594 435 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 NELFAQ9H3P2 528 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 DMRT3Q9NQL9 472 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SHPKQ9UHJ6 478 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GPR3P46089 330 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 DGKQP52824 942 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 HNF4GQ14541 408 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 LTB4RQ15722 352 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 FRRS1Q6ZNA5 592 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SLC29A4Q7RTT9 530 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 POLR3HQ9Y535 204 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TNFRSF10AO00220 468 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 RLN1P04808 185 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GP1BBP13224 206 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TACR3P29371 465 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SORCS1Q8WY21 1168 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 NUS1Q96E22 293 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 OR2AT4A6NND4 320 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 RPS27AP62979 156 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 UBA52P62987 128 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TATDN3Q17R31 274 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 PAQR9Q6ZVX9 377 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 NAGSQ8N159 534 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TERB2Q8NHR7 220 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 NARS2Q96I59 477 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 FZD1Q9UP38 647 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CACNG2Q9Y698 323 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 MTMR11A4FU01 709 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CLDN5O00501 218 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CRTAPO75718 401 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CRYZL1O95825 349 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CPT2P23786 658 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 FLT3LGP49771 235 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 FAM122BQ7Z309 247 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SAMD12Q8N8I0 201 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 OR2T35Q8NGX2 323 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TCTEX1D2Q8WW35 142 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 NAA11Q9BSU3 229 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 LRIT2A6NDA9 550 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 H0YIG0 161 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GPR39O43194 453 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 RAD51DO75771 328 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GABBR2O75899 941 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GABRR2P28476 465 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TRIM23P36406 574 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 OPRL1P41146 370 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 ARRB1P49407 418 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 LYSMD2Q8IV50 215 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 FURINP09958 794 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GNSP15586 552 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 MC3RP41968 323 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 POU6F2P78424 691 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GPIHBP1Q8IV16 184 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SPATA6LQ8N4H0 392 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 GHITMQ9H3K2 345 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 ZDHHC6Q9H6R6 413 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 FOXJ3Q9UPW0 622 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 DNPH1O43598 174 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 LAMP1P11279 417 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CDK5Q00535 292 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SLAMF1Q13291 335 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 OR52H1Q8NGJ2 320 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 YIPF6Q96EC8 236 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CPPED1Q9BRF8 314 aaPredicted RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 DUSP23Q9BVJ7 150 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TM6SF2Q9BZW4 377 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 TMEM88BA6NKF7 163 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 SSX4O60224 188 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 AHCYP23526 432 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 CSTF1Q05048 431 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 COMMD6Q7Z4G1 85 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 MFFQ9GZY8 342 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 EXOSC3Q9NQT5 275 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF224Q9NZL3 707 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 HCCSP53701 268 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 MRPS21P82921 87 aaKnown RBP4.64□□□□□ -1.67
PCDH9-201ENST00000377861 PNLIPRP3Q17RR3 467 aa4.64□□□□□ -1.67
PCDH9-201ENST00000377861 C4orf46Q504U0 113 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms