RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DPTQ07507 201 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ADAM15Q13444 863 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 GNA13Q14344 377 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 FIGNL1Q6PIW4 674 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF322Q6U7Q0 402 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 IZUMO1Q8IYV9 350 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OR4N4Q8N0Y3 316 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 HDDC3Q8N4P3 179 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OR7G1Q8NGA0 311 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OR6C4Q8NGE1 309 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 TRIM43Q96BQ3 446 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 IFT27Q9BW83 186 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 SLC6A20Q9NP91 592 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 PRDM7Q9NQW5 492 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 USP36Q9P275 1121 aaKnown RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 CBLCQ9ULV8 474 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 A0A1W2PRG6 482 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 BTN3A3O00478 584 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF780AO75290 641 aaPredicted RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 EIF4EP06730 217 aaKnown RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 BMP7P18075 431 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 NDUFV2P19404 249 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 DDX6P26196 483 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 NOS3P29474 1203 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 SEC13P55735 322 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 DEFB134Q4QY38 66 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 CEACAM19Q7Z692 300 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 ADGRD2Q7Z7M1 963 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 AMIGO1Q86WK6 493 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 PEX5LQ8IYB4 626 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 OR56A1Q8NGH5 318 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 MENTQ9BUN1 341 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 SLC6A17Q9H1V8 727 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 UBQLN3Q9H347 655 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 CERS4Q9HA82 394 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 SLC28A3Q9HAS3 691 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 C20orf141Q9NUB4 165 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 NUDT15Q9NV35 164 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 MAFFQ9ULX9 164 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 TRAV27A0A087WT01 109 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 CHST10O43529 356 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 HCN1O60741 890 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 ERP29P30040 261 aaKnown RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 GZMKP49863 264 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 EFNB1P98172 346 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 E2F1Q01094 437 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 GPR176Q14439 515 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 ARHGAP19Q14CB8 494 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 FCN2Q15485 313 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 AADACL4Q5VUY2 407 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 CD300LDQ6UXZ3 194 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 LINC00471Q8N535 108 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 TMIEQ8NEW7 156 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 OR7G2Q8NG99 324 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 OR5H6Q8NGV6 325 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 GRPEL2Q8TAA5 225 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 WFIKKN2Q8TEU8 576 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 ACOT11Q8WXI4 607 aaPredicted RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 THAP7Q9BT49 309 aaPredicted RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 OR52D1Q9H346 318 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 POLMQ9NP87 494 aaPredicted RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 PRSS16Q9NQE7 514 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 ACOXLQ9NUZ1 547 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 FBXO34Q9NWN3 711 aa11.32□□□□□ -0.6
CLIP3-201ENST00000360535 WSB2Q9NYS7 404 aaPredicted RBP11.32□□□□□ -0.6
CLIP3-201ENST00000360535 CXorf51AA0A1B0GTR3 108 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 A0A1W2PQ72 361 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 IRGMA1A4Y4 181 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 KDM4EB2RXH2 506 aaPredicted RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CASC3O15234 703 aaKnown RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 FABP7O15540 132 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 RNF13O43567 381 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 UQCRC1P31930 480 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 RRAS2P62070 204 aaPredicted RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 MAB21L1Q13394 359 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CAMK2BQ13554 666 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 IRF4Q15306 451 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ZSWIM7Q19AV6 140 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 PUS10Q3MIT2 529 aaKnown RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 GPR135Q8IZ08 494 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ACBD7Q8N6N7 88 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 FAM181AQ8N9Y4 354 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 TRIM63Q969Q1 353 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 PAWRQ96IZ0 340 aaKnown RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 RIPOR3Q96MK2 946 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CDCP1Q9H5V8 836 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CCDC86Q9H6F5 360 aaKnown RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 BCL2L10Q9HD36 194 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 MARK1Q9P0L2 795 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 DPP7Q9UHL4 492 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 LIPT1Q9Y234 373 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 LRRC72A6NJI9 287 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF888P0CJ79 500 aaPredicted RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 F3P13726 295 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 FGF9P31371 208 aaPredicted RBP11.31□□□□□ -0.6
CLIP3-201ENST00000360535 RPA4Q13156 261 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CEP78Q5JTW2 689 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 VITQ6UXI7 678 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF620Q6ZNG0 422 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 PIGKQ92643 395 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms