RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZNF655Q8N720 491 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 CSNK1A1LQ8N752 337 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 CLDN22Q8N7P3 220 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 COX18Q8N8Q8 333 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 OR2T33Q8NG76 320 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC37A2Q8TED4 501 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 C1GALT1C1Q96EU7 318 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 STACQ99469 402 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 STARD5Q9NSY2 213 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 SACM1LQ9NTJ5 587 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 C14orf119Q9NWQ9 140 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 MAT2BQ9NZL9 334 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 MN1Q10571 1320 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 NPIPA5A0A0B4J1W7 369 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 NPIPA7E9PJI5 369 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 IGHV4-34P06331 123 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 CT62P0C5K7 136 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 CLEC2LP0C7M8 214 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 NPIPA8P0DM63 369 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 MAP3K8P41279 467 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC1A3P43003 542 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 EIF2B2P49770 351 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 PSPHP78330 225 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 EXOSC7Q15024 291 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 TMEM44Q2T9K0 475 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 WDR88Q6ZMY6 472 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 LAX1Q8IWV1 398 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 BBS1Q8NFJ9 593 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF223Q9UK11 482 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 CBLCQ9ULV8 474 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 EXOGQ9Y2C4 368 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 V9GYH0 126 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC35F4A4IF30 521 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 TMEM221A6NGB7 291 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 HCRTR1O43613 425 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 RNF144AP50876 292 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 VSX2P58304 361 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 DEFA1P59665 94 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 DEFA3P59666 94 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 KRR1Q13601 381 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 OR1Q1Q15612 314 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 DESI1Q6ICB0 168 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 ZCCHC12Q6PEW1 402 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 UFD1Q92890 307 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 WDFY2Q96P53 400 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 TM9SF2Q99805 663 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 GSDMCQ9BYG8 508 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 UBQLN3Q9H347 655 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 MMP17Q9ULZ9 603 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 CSNK1G3Q9Y6M4 447 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 CDHR4A6H8M9 788 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 PRAMEF26H0Y7S4 382 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 LYPD3O95274 346 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 HMGN1P05114 100 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 ZGLP1P0C6A0 271 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 EIF2B5Q13144 721 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 NXNL2Q5VZ03 156 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 FIGNL1Q6PIW4 674 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 HSDL2Q6YN16 418 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 TMPRSS11AQ6ZMR5 421 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF438Q7Z4V0 828 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF761Q86XN6 746 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 ANKRD9Q96BM1 317 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 MSLNLQ96KJ4 702 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 KCTD7Q96MP8 289 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF649Q9BS31 505 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 TMEM165Q9HC07 324 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 KRCC1Q9NPI7 259 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 TOR4AQ9NXH8 423 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 PLEKHB1Q9UF11 243 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 MUTYHQ9UIF7 546 aa19.35■□□□□ 0.69
CCDC88B-203ENST00000359902 KIR2DS5A0A0G2JLQ3 304 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 A0A0G2JNG1 304 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 KIR2DS3K7RE56 304 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC30A4O14863 429 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 LALBAP00709 142 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 HTR1FP30939 366 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 SDC2P34741 201 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 KIR2DS5Q14953 304 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 CRTC2Q53ET0 693 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 CCBE1Q6UXH8 406 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 QSOX2Q6ZRP7 698 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 CTHRC1Q96CG8 243 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 DPH1Q9BZG8 443 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 HINT3Q9NQE9 182 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 CMAHPQ9Y471 501 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 GXYLT2A0PJZ3 443 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 UNC119BA6NIH7 251 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 SGK494L7N484 410 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 MAKP20794 623 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 GABRA5P31644 462 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 GABRA3P34903 492 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 GCGRP47871 477 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 FXYD6P3P58550 94 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 FABP5Q01469 135 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF155Q12901 538 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 HNRNPA0Q13151 305 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 DSG2Q14126 1118 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 CPOQ8IVL8 374 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 ZFP41Q8N8Y5 198 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms