RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 OR7D4Q8NG98 312 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TMBIM1Q969X1 311 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MYOZ2Q9NPC6 264 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 KCND3Q9UK17 655 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HLA-DPB1P04440 258 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF286BP0CG31 522 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PRPS1L1P21108 318 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OGDHQ02218 1023 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 LAMTOR4Q0VGL1 99 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 APOBEC3FQ8IUX4 373 aaKnown RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM132CQ8N3T6 1108 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PIWIL1Q96J94 861 aaKnown RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MS4A12Q9NXJ0 267 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 DVL1O14640 695 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GCAP28676 217 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GUCA1AP43080 201 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 KCNJ10P78508 379 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HTD2P86397 168 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MAD2L1BPQ15013 274 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF730Q6ZMV8 503 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TTLL10Q6ZVT0 673 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF765Q7L2R6 523 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 LRRTM1Q86UE6 522 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 KCTD13Q8WZ19 329 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MUS81Q96NY9 551 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SLC25A32Q9H2D1 315 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MYOZ1Q9NP98 299 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ENTPD4Q9Y227 616 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PCDHGA5Q9Y5G8 931 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SORL1Q92673 2214 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 FXYD6-FXYD2A0A087WZ82 144 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 J3KTA2 159 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LCMT2O60294 686 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 GADD45AP24522 165 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LIMK2P53671 638 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PTGES3Q15185 160 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MED22Q15528 200 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OR7E24Q6IFN5 339 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF438Q7Z4V0 828 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CSGALNACT1Q8TDX6 532 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SHARPINQ9H0F6 387 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FXYD6Q9H0Q3 95 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MEPEQ9NQ76 525 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 UXTQ9UBK9 157 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ACSL6Q9UKU0 697 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MUC4Q99102 2169 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 RP2O75695 350 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CSTAP01040 98 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CDK2P24941 298 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 IER5Q5VY09 327 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MTSS1LQ765P7 747 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZSWIM9Q86XI8 627 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HAS1Q92839 578 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OSGIN1Q9UJX0 560 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SLC15A5A6NIM6 579 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CDC123O75794 336 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ACRP10323 421 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PTPN11Q06124 597 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ITPK1Q13572 414 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 RAB39AQ14964 217 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SLC10A6Q3KNW5 377 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 GLT8D1Q68CQ7 371 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 VWA5B2Q8N398 1253 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LFNGQ8NES3 379 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF251Q9BRH9 671 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NDOR1Q9UHB4 597 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TCAPO15273 167 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PRKRAO75569 313 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ALPLP05186 524 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 THPOP40225 353 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PMP22Q01453 160 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SNAPC1Q16533 368 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 VARS2Q5ST30 1063 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 BRICD5Q6PL45 260 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TGIF2LXQ8IUE1 241 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 C5orf58C9J3I9 102 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 EPCAMP16422 314 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ALKBH1Q13686 389 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 BCL7AQ4VC05 210 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FAM74A1Q5RGS3 127 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF529Q6P280 563 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CD300LDQ6UXZ3 194 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CNTN4Q8IWV2 1026 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM176AQ96HP8 235 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF778Q96MU6 729 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TFB2MQ9H5Q4 396 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SLC6A14Q9UN76 642 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CDHR4A6H8M9 788 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MAGEB17A8MXT2 336 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ENTPD6O75354 484 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 EEDO75530 441 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OR4F21O95013 312 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HTR3BO95264 441 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 DLX5P56178 289 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 RRAS2P62070 204 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TREML2Q5T2D2 321 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LRRC52Q8N7C0 313 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NTAN1Q96AB6 310 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 AK6Q9Y3D8 172 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SPINK4O60575 86 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms