RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 LMF1Q96S06 567 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 TGIF2Q9GZN2 237 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 IMPAD1Q9NX62 359 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 NDUFA13Q9P0J0 144 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 SLC7A7Q9UM01 511 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 PCDHGA5Q9Y5G8 931 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 PCDHGA10Q9Y5H3 936 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 CCDC160A6NGH7 325 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ZAR1LA6NP61 321 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 M0R129 80 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 WBP4O75554 376 aaKnown RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 IGFBP1P08833 259 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF883P0CG24 379 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 DCDP81605 110 aaKnown RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 PIGFQ07326 219 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 C1orf94Q6P1W5 598 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 RRM2BQ7LG56 351 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 MEX3DQ86XN8 651 aaKnown RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 DEPDC4Q8N2C3 294 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 RHBDD1Q8TEB9 315 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 APH1BQ8WW43 257 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 CNOT9Q92600 299 aaKnown RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 EFHD2Q96C19 240 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ART5Q96L15 291 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 NUDT9Q9BW91 350 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 POLR1BQ9H9Y6 1135 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 C11orf16Q9NQ32 467 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 PAK1IP1Q9NWT1 392 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 TESQ9UGI8 421 aaKnown RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 CFL2Q9Y281 166 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 RALGAPA1Q6GYQ0 2036 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 IGLV3-12A0A075B6K2 115 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 POLR1CO15160 346 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 GDF9O60383 454 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ABCB7O75027 752 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 FAM20BO75063 409 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 HBQ1P09105 142 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 PPICP45877 212 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 CDC42P60953 191 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 CXCR4P61073 352 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 NEDD8Q15843 81 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF141Q15928 474 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 DECR1Q16698 335 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 P3H2Q8IVL5 708 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ZSCAN1Q8NBB4 408 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 PLPP5Q8NEB5 264 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 TMEM255BQ8WV15 326 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 ACOT11Q8WXI4 607 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 GPA33Q99795 319 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 NXF5Q9H1B4 397 aaKnown RBP12.37□□□□□ -0.43
HMGB1-202ENST00000339872 SCN3BQ9NY72 215 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 COPS7AQ9UBW8 275 aa12.37□□□□□ -0.43
HMGB1-202ENST00000339872 A0A0C4DFX4 3053 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 TRAPPC13A5PLN9 417 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 NPIPB9F8W1W9 429 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 HTR1AP08908 422 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 PTNP21246 168 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 DRD5P21918 477 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 IFNGR2P38484 337 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ATP12AP54707 1039 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 PSMD4P55036 377 aaKnown RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ILKQ13418 452 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 TRA2AQ13595 282 aaKnown RBP eCLIP12.36□□□□□ -0.433e-6■■■■□ 20.9
HMGB1-202ENST00000339872 FGFBP1Q14512 234 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 OR1Q1Q15612 314 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 AGBL5Q8NDL9 886 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 PIGXQ8TBF5 258 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 RNF217Q8TC41 542 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 FAM46AQ96IP4 442 aaKnown RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 RHNO1Q9BSD3 238 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 CCDC90BQ9GZT6 254 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 C14orf105Q9NVL8 296 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 TPRKBQ9Y3C4 175 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 C2orf92A0A1B0GVN3 265 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 FRG2CA6NGY1 282 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 IDSB3KWA1 339 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 FLRT2O43155 660 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 HEXBP07686 556 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 FGF5P12034 268 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ACP1P24666 158 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ALDH6A1Q02252 535 aaKnown RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 COX10Q12887 443 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 PLA2G2CQ5R387 149 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF385CQ66K41 422 aaPredicted RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 PRICKLE2Q7Z3G6 844 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 GPR141Q7Z602 305 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 LSRQ86X29 649 aaPredicted RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 CCDC103Q8IW40 242 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 C9orf40Q8IXQ3 194 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF540Q8NDQ6 660 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 OR4C3Q8NH37 302 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 LCORQ96JN0 433 aaPredicted RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 NODALQ96S42 347 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 POLR2J2Q9GZM3 115 aaKnown RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 YIPF3Q9GZM5 350 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 RBM38Q9H0Z9 239 aaKnown RBP12.36□□□□□ -0.43
HMGB1-202ENST00000339872 VCX3AQ9NNX9 186 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 DNAJB12Q9NXW2 375 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms