RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TMEM238C9JI98 176 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 F8VP50 259 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TLR4O00206 839 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 RNF13O43567 381 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PLRG1O43660 514 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ENDOD1O94919 500 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CKMP06732 381 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MAOAP21397 527 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 HOXA11P31270 313 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CTSCP53634 463 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CRHR2Q13324 411 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SERTAD2Q14140 314 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CSHL1Q14406 222 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 C2orf76Q3KRA6 126 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CLEC6AQ6EIG7 209 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF790Q6PG37 636 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM270Q6UE05 265 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 BHLHA15Q7RTS1 189 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 FOXRED2Q8IWF2 684 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PRSS58Q8IYP2 241 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 HDDC3Q8N4P3 179 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 DCBLD1Q8N8Z6 715 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SDR9C7Q8NEX9 313 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR8U1Q8NH10 309 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MRPL38Q96DV4 380 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CASD1Q96PB1 797 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 GAL3ST4Q96RP7 486 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 URM1Q9BTM9 101 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM27Q9HBJ8 222 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MID1IP1Q9NPA3 183 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TAS2R5Q9NYW4 299 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 FARSAQ9Y285 508 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZFP37Q9Y6Q3 630 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 LOC105369274A0A096LPK9 316 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MEX3AA1L020 520 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CXorf65A6NEN9 183 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SYT5O00445 386 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 EEF1E1O43324 174 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 WDR1O75083 606 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF682O95780 498 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 RECKO95980 971 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 C1RP00736 705 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PRKCGP05129 697 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 RHOP08100 348 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 AKT2P31751 481 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ARRB2P32121 409 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 GLRBP48167 497 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 NDUFA6P56556 154 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SOX8P57073 446 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TAS2R43P59537 309 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SELENOVP59797 346 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PPIAP62937 165 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ITPK1Q13572 414 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 FNDC3BQ53EP0 1204 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 GCNT6Q5T4J0 391 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF660Q6AZW8 331 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 GDPD4Q6W3E5 623 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR4N4Q8N0Y3 316 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 KCNRGQ8N5I3 272 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 INO80EQ8NBZ0 244 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR2A12Q8NGT7 310 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SEMA4DQ92854 862 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MISP3Q96FF7 219 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MARCH5Q9NX47 278 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 KCMF1Q9P0J7 381 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SLC17A6Q9P2U8 582 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZFP30Q9Y2G7 519 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 STARD10Q9Y365 291 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PPIL1Q9Y3C6 166 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 FLVCR1Q9Y5Y0 555 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TEX13DA0A0J9YY54 714 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM129A0AVI4 362 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 UBFD1O14562 309 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ADAMTS3O15072 1205 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 RRP8O43159 456 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 NME1P15531 152 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 CHATP28329 748 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR3A1P47881 315 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SIM1P81133 766 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF234Q14588 700 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PNLIPRP3Q17RR3 467 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM241Q24JQ0 296 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 KHDRBS2Q5VWX1 349 aaKnown RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR8G2PQ6IF36 304 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF813Q6ZN06 617 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 C1orf122Q6ZSJ8 110 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 MTSS1LQ765P7 747 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR4E2Q8NGC2 313 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 OR9Q2Q8NGE9 314 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 BBS10Q8TAM1 723 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 NPRL2Q8WTW4 380 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM19Q96HH6 336 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ATG5Q9H1Y0 275 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 HIPK2Q9H2X6 1198 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 NMRK2Q9NPI5 230 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 GIMAP2Q9UG22 337 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ADAM29Q9UKF5 820 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 PLEKHM1Q9Y4G2 1056 aa3.91□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF142P52746 1687 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-201ENST00000338963 SLIT2O94813 1529 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms