RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SOX3P41225 446 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SPCS2Q15005 226 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SLC51BQ86UW2 128 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 DCAF4L2Q8NA75 395 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ANKK1Q8NFD2 765 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 OR6C2Q9NZP2 312 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 EXO1Q9UQ84 846 aaKnown RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 TDRD15B5MCY1 1934 aaKnown RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 RNASET2O00584 256 aaKnown RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ICMTO60725 284 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 F10P00742 488 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 KCNJ8Q15842 424 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF691Q5VV52 312 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 CEPT1Q9Y6K0 416 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 BCKDHBP21953 392 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 TLE1Q04724 770 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 MSS51Q4VC12 460 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 C19orf35Q6ZS72 473 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF454Q8N9F8 522 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 FAM46AQ96IP4 442 aaKnown RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CARS2Q9HA77 564 aaKnown RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 DPM1O60762 260 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CTSOP43234 321 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CNN3Q15417 329 aaKnown RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 C11orf91Q3C1V1 193 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 ABHD5Q8WTS1 349 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 PHYHIPQ92561 330 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 GCM1Q9NP62 436 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 GPRIN2O60269 458 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 STK17BO94768 372 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 MPC1LP0DKB6 136 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF776Q68DI1 518 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 KRTCAP2Q8N6L1 136 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 PXT1Q8NFP0 134 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 KCNA7Q96RP8 456 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CERS4Q9HA82 394 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 NOX3Q9HBY0 568 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 A0A1W2PQ09 198 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 SMIM30A4D0T7 59 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 ARHGAP33O14559 1287 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 PPT1P50897 306 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 PDLIM3Q53GG5 364 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF574Q6ZN55 896 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CFAP77Q6ZQR2 320 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 NUP43Q8NFH3 380 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CMSS1Q9BQ75 279 aaKnown RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 TLR9Q9NR96 1032 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 LSM5Q9Y4Y9 91 aaKnown RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 SPO11Q9Y5K1 396 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 PRAMEF11O60813 436 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 TOX4O94842 621 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 SLC6A8P48029 635 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CHRNA6Q15825 494 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 LIX1LQ8IVB5 337 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 C15orf54Q8N8G6 183 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 OR5D16Q8NGK9 328 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 FBXL18Q96ME1 805 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 SLC35E2BP0CK96 405 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CKMT1AP12532 417 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 BDH1Q02338 343 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CES4AQ5XG92 561 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 GPR152Q8TDT2 470 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 SLAMF9Q96A28 289 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 MIB2Q96AX9 1013 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 IGFLR1Q9H665 355 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CADP27708 2225 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 A0A1W2PPV4 95 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 TUBAL3A6NHL2 446 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 KDELR3O43731 214 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 CSKP41240 450 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 STK19P49842 368 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 RING1Q06587 406 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 NLRP8Q86W28 1048 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 SYNPRQ8TBG9 265 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 MTHFD2LQ9H903 347 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-201ENST00000328333 RNF150Q9ULK6 438 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 TRAPPC6AO75865 159 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 GSRP00390 522 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 MT-ND4LP03901 98 aa13.53□□□□□ -0.24
COL7A1-201ENST00000328333 C2orf78A6NCI8 922 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 FAM110CQ1W6H9 321 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 FBXL22Q6P050 247 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 TMEM135Q86UB9 458 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 PLGLB1Q02325 96 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF92Q03936 586 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 SBSNQ6UWP8 590 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 OR51T1Q8NGJ9 327 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 OR6F1Q8NGZ6 308 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 SPRYD4Q8WW59 207 aaPredicted RBP13.52□□□□□ -0.24
COL7A1-201ENST00000328333 SUSD3Q96L08 255 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 VPS25Q9BRG1 176 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 TRAV18A0A075B6X5 111 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 CD300LBA8K4G0 201 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 SNRNP70P08621 437 aaKnown RBP13.52□□□□□ -0.24
COL7A1-201ENST00000328333 LRP8Q14114 963 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 LRIT3Q3SXY7 679 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 WDR88Q6ZMY6 472 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 GLB1L2Q8IW92 636 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 NRSN1Q8IZ57 195 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 OR10K1Q8NGX5 313 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms