RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZPLD1Q8TCW7 415 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 FCGR1BQ92637 280 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 RANBP9Q96S59 729 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 CRACR2AQ9BSW2 395 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 DUS2Q9NX74 493 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 ABCD2Q9UBJ2 740 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 P2RX2Q9UBL9 471 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 PRODH2Q9UF12 536 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 RSPH14Q9UHP6 348 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 TP53TG3Q9ULZ0 132 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 EXOSC1Q9Y3B2 195 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 RRP15Q9Y3B9 282 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 KLF2Q9Y5W3 355 aaPredicted RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 ADAMTS9Q9P2N4 1935 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 EFCAB7A8K855 629 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 PDXKO00764 312 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 GPAA1O43292 621 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 ZCCHC18P0CG32 403 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 HSPA5P11021 654 aaKnown RBP2.53□□□□□ -2
HMGB1-201ENST00000326004 LAMP1P11279 417 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 FUT1P19526 365 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 ADSSP30520 456 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 PRPHP41219 470 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 EMDP50402 254 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 CSRP3P50461 194 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 KRTAP10-5P60370 271 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 PAX2Q02962 417 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 SPP2Q13103 211 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 RAB35Q15286 201 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 LGSNQ5TDP6 509 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 MARC1Q5VT66 337 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 SLC25A24Q6NUK1 477 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 NAXDQ8IW45 347 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 CCDC36Q8IYA8 594 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 SPAG16Q8N0X2 631 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 CERS5Q8N5B7 392 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 BCORP1Q8N888 145 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 DENND6BQ8NEG7 585 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 RAB7BQ96AH8 199 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 DTNBP1Q96EV8 351 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 DNAJA3Q96EY1 480 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 PPP1R16AQ96I34 528 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 SIGLEC12Q96PQ1 595 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 OR5M11Q96RB7 305 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 TXN2Q99757 166 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 HCAR1Q9BXC0 346 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 CCSER1Q9C0I3 900 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 OPN3Q9H1Y3 402 aaPredicted RBP2.53□□□□□ -2
HMGB1-201ENST00000326004 COQ10BQ9H8M1 238 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 ROPN1Q9HAT0 212 aaPredicted RBP2.53□□□□□ -2
HMGB1-201ENST00000326004 POLD4Q9HCU8 107 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 TRPV5Q9NQA5 729 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 EXOSC3Q9NQT5 275 aaKnown RBP2.53□□□□□ -2
HMGB1-201ENST00000326004 DCAF16Q9NXF7 216 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 GDAP2Q9NXN4 497 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 AATFQ9NY61 560 aaKnown RBP eCLIP2.53□□□□□ -2
HMGB1-201ENST00000326004 ANKMY1Q9P2S6 941 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 DPM3Q9P2X0 92 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 BARX2Q9UMQ3 279 aaPredicted RBP2.53□□□□□ -2
HMGB1-201ENST00000326004 IKBKGQ9Y6K9 419 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.53□□□□□ -2
HMGB1-201ENST00000326004 TET3O43151 1660 aa2.53□□□□□ -2
HMGB1-201ENST00000326004 TULP4Q9NRJ4 1543 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 NCAPD2Q15021 1401 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 NCOA3Q9Y6Q9 1424 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 KIDINS220Q9ULH0 1771 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 MYO5CQ9NQX4 1742 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 IGLV3-10A0A075B6K4 115 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SYNJ2BP-COX16A0A087WUM0 186 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 A0A1B0GVY2 172 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 FAM230AA0A1W2PPH8 454 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 A0A1W2PQ72 361 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 CCT8L1PA6NM43 557 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 A8MX80 341 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 F8WDY8 70 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 G3V3Y1 287 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SLC17A2O00624 439 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 IMPA2O14732 288 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TOM1L1O75674 476 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 AK1P00568 194 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TSPY4P0CV99 314 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TSPY10P0CW01 314 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 RRASP10301 218 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SDC1P18827 310 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 OR1D4P47884 311 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 HTR5AP47898 357 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 ALDH3B2P48448 385 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 IFNAR2P48551 515 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 POU3F4P49335 361 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SLC25A1P53007 311 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 RPS6P62753 249 aaKnown RBP2.52□□□□□ -2.01
HMGB1-201ENST00000326004 ELP6Q0PNE2 266 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SCGB2A2Q13296 93 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SLC15A2Q16348 729 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 MEDAGQ5VYS4 303 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 CGB2Q6NT52 195 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 PNCKQ6P2M8 343 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms