RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ZNF14P17017 642 aaPredicted RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 TRA2BP62995 288 aaKnown RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 LDLRAD1Q5T700 205 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 PIP5KL1Q5T9C9 394 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 CD276Q5ZPR3 534 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 OR6V1Q8N148 313 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 C4orf36Q96KX1 117 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 FN3KQ9H479 309 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 DHDHQ9UQ10 334 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 C14orf166Q9Y224 244 aaKnown RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 TRAV18A0A075B6X5 111 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 A0A1W2PPL8 197 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 FAM183AA6NL82 134 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 PSMB1P20618 241 aaKnown RBP18.17■□□□□ 0.5
USP48-201ENST00000308271 AKT2P31751 481 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 CTSCP53634 463 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 ZMYND11Q15326 602 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 NKG7Q16617 165 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 RHNO1Q9BSD3 238 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 ACER3Q9NUN7 267 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 RCE1Q9Y256 329 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 ASPDHA6ND91 283 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 AMY2AP04746 511 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 UGT2B7P16662 529 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 MGAT3Q09327 533 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 DEFB134Q4QY38 66 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 ALG10BQ5I7T1 473 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 HSD11B1LQ7Z5J1 315 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 MS4A4EQ96PG1 132 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 PITHD1Q9GZP4 211 aaPredicted RBP18.17■□□□□ 0.5
USP48-201ENST00000308271 ABCG4Q9H172 646 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 NDUFB11Q9NX14 153 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 TMEM129A0AVI4 362 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 ZNF878C9JN71 531 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 FAM227AF5H4B4 570 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 ZNF780AO75290 641 aaPredicted RBP18.17■□□□□ 0.5
USP48-201ENST00000308271 PTPN6P29350 595 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 RAB11BQ15907 218 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 HERVK_113Q902F9 699 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 TMEM41AQ96HV5 264 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 G6PC3Q9BUM1 346 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 SRA1Q9HD15 236 aaKnown RBP18.17■□□□□ 0.5
USP48-201ENST00000308271 TMEM184CQ9NVA4 438 aa18.17■□□□□ 0.5
USP48-201ENST00000308271 C6P13671 934 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 EPHA2P29317 976 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 MAPK14Q16539 360 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 CDNFQ49AH0 187 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 VASH1Q7L8A9 365 aaPredicted RBP18.16■□□□□ 0.5
USP48-201ENST00000308271 ZMYND19Q96E35 227 aaPredicted RBP18.16■□□□□ 0.5
USP48-201ENST00000308271 ZNF285Q96NJ3 590 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 GPN3Q9UHW5 284 aaPredicted RBP18.16■□□□□ 0.5
USP48-201ENST00000308271 PRRC2BQ5JSZ5 2229 aaKnown RBP18.16■□□□□ 0.5
USP48-201ENST00000308271 F8W036 122 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 SMLR1H3BR10 107 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 BLOC1S1P78537 153 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 GFOD2Q3B7J2 385 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 ULK3Q6PHR2 472 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 CCDC190Q86UF4 302 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 SLC35F2Q8IXU6 374 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 SLAIN1Q8ND83 568 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 OR5AK2Q8NH90 309 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 ARL11Q969Q4 196 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 VNN3Q9NY84 501 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 KCNN3Q9UGI6 736 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 TMPRSS11EQ9UL52 423 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 KIF13BQ9NQT8 1826 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 C1orf105O95561 183 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 CAPZA1P52907 286 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 TOMM20Q15388 145 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 MTFR2Q6P444 385 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 IL17RDQ8NFM7 739 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 SFXN5Q8TD22 340 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 ZAR1LA6NP61 321 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 PRAMEF2O60811 474 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 GRK5P34947 590 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 MC3RP41968 323 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 KCNJ5P48544 419 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 SAXO2Q658L1 398 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 FIGNL1Q6PIW4 674 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 SLCO4C1Q6ZQN7 724 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 OR5AR1Q8NGP9 310 aa18.16■□□□□ 0.5
USP48-201ENST00000308271 MEPEQ9NQ76 525 aaPredicted RBP18.16■□□□□ 0.5
USP48-201ENST00000308271 TEX13DA0A0J9YY54 714 aaPredicted RBP18.15■□□□□ 0.5
USP48-201ENST00000308271 ZNF860A6NHJ4 632 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 CD6P30203 668 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 GRPRP30550 384 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 NKX3-2P78367 333 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 ELAVL3Q14576 367 aaKnown RBP18.15■□□□□ 0.5
USP48-201ENST00000308271 ARHGAP19Q14CB8 494 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 KIAA1211LQ6NV74 962 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 SFXN4Q6P4A7 337 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 ZSCAN1Q8NBB4 408 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 OR51L1Q8NGJ5 315 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 SYNPO2LQ9H987 977 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 AXIN1O15169 862 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 INHAP05111 366 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 SPNP16150 400 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 PRKCAP17252 672 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 IMPA1P29218 277 aa18.15■□□□□ 0.5
USP48-201ENST00000308271 PRLHRP49683 370 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms