RNA–Protein interactions for RNA: ENST00000302190.8

SDC2-201, Transcript of syndecan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-201ENST00000302190 OR2L2Q8NH16 312 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 GALNT9Q9HCQ5 603 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 SLAMF7Q9NQ25 335 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 YBX2Q9Y2T7 364 aaKnown RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 EXOSC1Q9Y3B2 195 aaKnown RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 TRPM6Q9BX84 2022 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 HMGN4O00479 90 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 KHNYNO15037 678 aaKnown RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 VEGFDO43915 354 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 PRKNO60260 465 aaPredicted RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 PTPN6P29350 595 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 VSX2P58304 361 aaPredicted RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 PPP3R1P63098 170 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 CDC20Q12834 499 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 ILF3Q12906 894 aaKnown RBP eCLIP13.17□□□□□ -0.38e-7■■■□□ 15
SDC2-201ENST00000302190 SLC25A25Q6KCM7 469 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 OR52E1Q8NGJ3 308 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 OR52E2Q8NGJ4 325 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 SLC25A36Q96CQ1 311 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 LYSMD1Q96S90 227 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 DPCDQ9BVM2 203 aaPredicted RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 ZDHHC5Q9C0B5 715 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 HHATLQ9HCP6 504 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 CCDC59Q9P031 241 aaKnown RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 RASD1Q9Y272 281 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 PTPRDP23468 1912 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 TEX46H3BTG2 121 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 PIP5K1CO60331 668 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 LINC00271P0C7V0 271 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 HOXB3P14651 431 aaPredicted RBP13.17□□□□□ -0.3
SDC2-201ENST00000302190 SHC2P98077 582 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 HDDC2Q7Z4H3 204 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 FAM220AQ7Z4H9 259 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 TMEM255BQ8WV15 326 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 ALG8Q9BVK2 526 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 KCMF1Q9P0J7 381 aa13.17□□□□□ -0.3
SDC2-201ENST00000302190 A0A087WUU8 490 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 PPP1R3DO95685 299 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 AIFM1O95831 613 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 HIST1H2ABP04908 130 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 HIST1H1TP22492 207 aaPredicted RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 SHC1P29353 583 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 PKLRP30613 574 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 KCNJ5P48544 419 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 MESP2Q0VG99 397 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ILKQ13418 452 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 FAM111BQ6SJ93 734 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 RPTNQ6XPR3 784 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 IDO2Q6ZQW0 420 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 HIST3H2AQ7L7L0 130 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 SLC44A3Q8N4M1 653 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 BBS1Q8NFJ9 593 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 TM9SF4Q92544 642 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 HIST1H2ACQ93077 130 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 SIPA1Q96FS4 1042 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 LRIG1Q96JA1 1093 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 OR7D2Q96RA2 312 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 GPR174Q9BXC1 333 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 CACNG6Q9BXT2 260 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 GABARAPL3Q9BY60 117 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 PLA2G12AQ9BZM1 189 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 SRA1Q9HD15 236 aaKnown RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 A0A1W2PS29 197 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 OR6C74A6NCV1 312 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 FBXO45P0C2W1 286 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ZNF888P0CJ79 500 aaPredicted RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 ZNF3P17036 446 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ADH7P40394 386 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 OMPP47874 163 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 TAGLNQ01995 201 aaKnown RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 P2RY14Q15391 338 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 FLYWCH1Q4VC44 716 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 TTLQ8NG68 377 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 TNFAIP8L1Q8WVP5 186 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 MS4A8Q9BY19 250 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 SLC25A18Q9H1K4 315 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 NARFLQ9H6Q4 476 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ATP13A2Q9NQ11 1180 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 NFKBIL1Q9UBC1 381 aaPredicted RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 KCNE3Q9Y6H6 103 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 GREB1Q4ZG55 1949 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 C1orf226A1L170 272 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ZAR1LA6NP61 321 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ZNF670-ZNF695F2Z2N8 137 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 FOXE1O00358 373 aaPredicted RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 MT-ND5P03915 603 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 HK1P19367 917 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 TRIM23P36406 574 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 P2RY2P41231 377 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 CLDN12P56749 244 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 MLLT11Q13015 90 aaPredicted RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 CST6Q15828 149 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 SSX1Q16384 188 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 GJD3Q8N144 294 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 GABARAPL1Q9H0R8 117 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 ZNF304Q9HCX3 659 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 MBNL1Q9NR56 388 aaKnown RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 GPATCH2Q9NW75 528 aa13.16□□□□□ -0.3
SDC2-201ENST00000302190 NDRG2Q9UN36 371 aaKnown RBP13.16□□□□□ -0.3
SDC2-201ENST00000302190 CAPZA2P47755 286 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms