RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SEPT2Q15019 361 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 FSD1Q9BTV5 496 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 TRIM6Q9C030 488 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 BATF3Q9NR55 127 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 CADPSQ9ULU8 1353 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC6Q16204 474 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 TAX1BP1Q86VP1 789 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 TBC1D31Q96DN5 1066 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 GOLGA8KD6RF30 607 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 PPP2R5EQ16537 467 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 TBC1D9Q6ZT07 1266 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC51Q96ER9 411 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 SOS1Q07889 1333 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-220ENST00000641603 BLMP54132 1417 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-220ENST00000641603 PEG3Q9GZU2 1588 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 AOX1Q06278 1338 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 KDM5DQ9BY66 1539 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 NDUFAB1O14561 156 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 TNNC1P63316 161 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 WASHC4Q2M389 1173 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 UHRF1BP1Q6BDS2 1440 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 TTC41PQ6P2S7 1318 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 F13A1P00488 732 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 TTC22Q5TAA0 569 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 MAP3K21Q5TCX8 1036 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 LRRC45Q96CN5 670 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 DRC1Q96MC2 740 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 FLOT1O75955 427 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 EVCP57679 992 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 TMC6Q7Z403 805 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 U3KPZ7 1027 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC69A6NI79 296 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 CHMP4BP1P59074 171 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 RMDN2Q96LZ7 410 aa5.34□□□□□ -1.55
SCN1A-220ENST00000641603 CEP104O60308 925 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 PPP2R3AQ06190 1150 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 TYRO3Q06418 890 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 DRP2Q13474 957 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 ZMAT2Q96NC0 199 aaKnown RBP5.34□□□□□ -1.56
SCN1A-220ENST00000641603 NBPF3Q9H094 633 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 EVI5O60447 810 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 LMBR1Q8WVP7 490 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC151A5D8V7 595 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 NOL3O60936 208 aaKnown RBP5.34□□□□□ -1.56
SCN1A-220ENST00000641603 KIF4AO95239 1232 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 WWC2Q6AWC2 1192 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 GDAP1L1Q96MZ0 367 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 MYO1AQ9UBC5 1043 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 IGF1RP08069 1367 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 KIF24Q5T7B8 1368 aa5.34□□□□□ -1.56
SCN1A-220ENST00000641603 FOXD1Q16676 465 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 NFXL1Q6ZNB6 911 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 MRPS27Q92552 414 aaKnown RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 RAB3IPQ96QF0 476 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 EXOSC9Q06265 439 aaKnown RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 ARHGAP18Q8N392 663 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 REREQ9P2R6 1566 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 BCAR3O75815 825 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 TWISTNBQ3B726 338 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 SPECC1Q5M775 1068 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 RUBCNQ92622 972 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 JAKMIP2Q96AA8 810 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 LRRC27Q9C0I9 530 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 RRP7AQ9Y3A4 280 aaKnown RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 PHLPP2Q6ZVD8 1323 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 CHUKO15111 745 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 ARID4AP29374 1257 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 BRAPQ7Z569 592 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 CEP63Q96MT8 703 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 PLCB1Q9NQ66 1216 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 HDAC9Q9UKV0 1011 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 CNPY4Q8N129 248 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 GAS2L2Q8NHY3 880 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 FAM210AQ96ND0 272 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 SEC62Q99442 399 aaKnown RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 BCAP29Q9UHQ4 241 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 PLCD3Q8N3E9 789 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 TTC12Q9H892 705 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 GOLGA6CA6NDK9 693 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 GOLGA6DP0CG33 693 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 SYT1P21579 422 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 MUM1L1Q5H9M0 696 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 MAATS1Q7Z4T9 603 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 SREK1Q8WXA9 508 aaKnown RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 KIF1BPQ96EK5 621 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 NAP1L3Q99457 506 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-220ENST00000641603 GOLGA6AQ9NYA3 693 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 TMX3Q96JJ7 454 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 SELENOOQ9BVL4 669 aa5.33□□□□□ -1.56
SCN1A-220ENST00000641603 OAS2P29728 719 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 LMNB2Q03252 620 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC102BQ68D86 513 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NOB1Q9ULX3 412 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 FAN1Q9Y2M0 1017 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 RABGAP1Q9Y3P9 1069 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 ATAD2BQ9ULI0 1458 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 PAK2Q13177 524 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 AEBP2Q6ZN18 517 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 CLEC17AQ6ZS10 378 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms