RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GNAT3A8MTJ3 354 aa22.04■■□□□ 1.12
CLN3-264ENST00000637985 KCNQ3O43525 872 aa22.04■■□□□ 1.12
CLN3-264ENST00000637985 CELF2O95319 508 aaKnown RBP22.04■■□□□ 1.12
CLN3-264ENST00000637985 CRY2Q49AN0 593 aa22.04■■□□□ 1.12
CLN3-264ENST00000637985 CIAPIN1Q6FI81 312 aa22.04■■□□□ 1.12
CLN3-264ENST00000637985 LARGE2Q8N3Y3 721 aa22.03■■□□□ 1.12
CLN3-264ENST00000637985 KNSTRNQ9Y448 316 aa22.03■■□□□ 1.12
CLN3-264ENST00000637985 GRIPAP1Q4V328 841 aa22.02■■□□□ 1.12
CLN3-264ENST00000637985 ADARB2Q9NS39 739 aaKnown RBP22.02■■□□□ 1.12
CLN3-264ENST00000637985 GPRC5DQ9NZD1 345 aa22.02■■□□□ 1.12
CLN3-264ENST00000637985 FAM177BA6PVY3 158 aa22.01■■□□□ 1.11
CLN3-264ENST00000637985 DIAPH1O60610 1272 aaKnown RBP22.01■■□□□ 1.11
CLN3-264ENST00000637985 GAS2L2Q8NHY3 880 aa22.01■■□□□ 1.11
CLN3-264ENST00000637985 CEMIPQ8WUJ3 1361 aa22■■□□□ 1.11
CLN3-264ENST00000637985 PRAMEF22A3QJZ6 481 aa22■■□□□ 1.11
CLN3-264ENST00000637985 AMER1Q5JTC6 1135 aaPredicted RBP22■■□□□ 1.11
CLN3-264ENST00000637985 PRPF38BQ5VTL8 546 aaKnown RBP22■■□□□ 1.11
CLN3-264ENST00000637985 GLIS2Q9BZE0 524 aaPredicted RBP22■■□□□ 1.11
CLN3-264ENST00000637985 PGAP2Q9UHJ9 254 aa22■■□□□ 1.11
CLN3-264ENST00000637985 BTBD11A6QL63 1104 aa21.99■■□□□ 1.11
CLN3-264ENST00000637985 GTF2E1P29083 439 aaPredicted RBP21.99■■□□□ 1.11
CLN3-264ENST00000637985 SOX10P56693 466 aa21.99■■□□□ 1.11
CLN3-264ENST00000637985 ZIC5Q96T25 663 aa21.99■■□□□ 1.11
CLN3-264ENST00000637985 NBPF26B4DH59 902 aa21.98■■□□□ 1.11
CLN3-264ENST00000637985 HOXA10P31260 410 aaPredicted RBP21.98■■□□□ 1.11
CLN3-264ENST00000637985 NOGQ13253 232 aa21.98■■□□□ 1.11
CLN3-264ENST00000637985 NBPF10Q6P3W6 841 aaKnown RBP21.98■■□□□ 1.11
CLN3-264ENST00000637985 NBPF15Q8N660 670 aa21.98■■□□□ 1.11
CLN3-264ENST00000637985 HLFQ16534 295 aa21.97■■□□□ 1.11
CLN3-264ENST00000637985 NIM1KQ8IY84 436 aa21.97■■□□□ 1.11
CLN3-264ENST00000637985 ABCC12Q96J65 1359 aa21.97■■□□□ 1.11
CLN3-264ENST00000637985 SNRPA1P09661 255 aaKnown RBP21.96■■□□□ 1.11
CLN3-264ENST00000637985 SLC51AQ86UW1 340 aa21.95■■□□□ 1.1
CLN3-264ENST00000637985 ZC3H15Q8WU90 426 aaKnown RBP21.95■■□□□ 1.1
CLN3-264ENST00000637985 CXCL9Q07325 125 aa21.94■■□□□ 1.1
CLN3-264ENST00000637985 NUTM1Q86Y26 1132 aa21.94■■□□□ 1.1
CLN3-264ENST00000637985 NYXQ9GZU5 481 aa21.94■■□□□ 1.1
CLN3-264ENST00000637985 ZNF408Q9H9D4 720 aa21.94■■□□□ 1.1
CLN3-264ENST00000637985 KIF7Q2M1P5 1343 aa21.94■■□□□ 1.1
CLN3-264ENST00000637985 NPC1L1Q9UHC9 1359 aa21.94■■□□□ 1.1
CLN3-264ENST00000637985 PPIP5K2O43314 1243 aa21.93■■□□□ 1.1
CLN3-264ENST00000637985 RPGRQ92834 1020 aaKnown RBP21.93■■□□□ 1.1
CLN3-264ENST00000637985 VPS33BQ9H267 617 aa21.93■■□□□ 1.1
CLN3-264ENST00000637985 SAGE1Q9NXZ1 904 aa21.93■■□□□ 1.1
CLN3-264ENST00000637985 RIC1Q4ADV7 1423 aa21.92■■□□□ 1.1
CLN3-264ENST00000637985 GMPSP49915 693 aaPredicted RBP21.92■■□□□ 1.1
CLN3-264ENST00000637985 HIRAP54198 1017 aaPredicted RBP21.92■■□□□ 1.1
CLN3-264ENST00000637985 CDC37L1Q7L3B6 337 aa21.92■■□□□ 1.1
CLN3-264ENST00000637985 CRAMP1Q96RY5 1269 aa21.92■■□□□ 1.1
CLN3-264ENST00000637985 ZNRF3Q9ULT6 936 aa21.92■■□□□ 1.1
CLN3-264ENST00000637985 PPEF1O14829 653 aaPredicted RBP21.91■■□□□ 1.1
CLN3-264ENST00000637985 AOC3Q16853 763 aa21.91■■□□□ 1.1
CLN3-264ENST00000637985 HUNKP57058 714 aa21.9■■□□□ 1.1
CLN3-264ENST00000637985 CDHR2Q9BYE9 1310 aa21.89■■□□□ 1.1
CLN3-264ENST00000637985 FAM155AB1AL88 458 aaPredicted RBP21.89■■□□□ 1.09
CLN3-264ENST00000637985 RBM17Q96I25 401 aaKnown RBP21.89■■□□□ 1.09
CLN3-264ENST00000637985 COL3A1P02461 1466 aaPredicted RBP21.89■■□□□ 1.09
CLN3-264ENST00000637985 TCERG1O14776 1098 aaKnown RBP21.88■■□□□ 1.09
CLN3-264ENST00000637985 U2SURPO15042 1029 aaKnown RBP21.88■■□□□ 1.09
CLN3-264ENST00000637985 ERVV-1B6SEH8 477 aa21.87■■□□□ 1.09
CLN3-264ENST00000637985 TRPM4Q8TD43 1214 aa21.87■■□□□ 1.09
CLN3-264ENST00000637985 PHACTR3Q96KR7 559 aa21.87■■□□□ 1.09
CLN3-264ENST00000637985 IBTKQ9P2D0 1353 aaPredicted RBP21.87■■□□□ 1.09
CLN3-264ENST00000637985 NUP98P52948 1817 aa21.86■■□□□ 1.09
CLN3-264ENST00000637985 RGMBQ6NW40 437 aa21.86■■□□□ 1.09
CLN3-264ENST00000637985 RTFDC1Q9BY42 306 aaPredicted RBP21.86■■□□□ 1.09
CLN3-264ENST00000637985 RNF186Q9NXI6 227 aa21.86■■□□□ 1.09
CLN3-264ENST00000637985 ATP6V0A2Q9Y487 856 aa21.86■■□□□ 1.09
CLN3-264ENST00000637985 KIF23Q02241 960 aaPredicted RBP21.85■■□□□ 1.09
CLN3-264ENST00000637985 USP48Q86UV5 1035 aa21.85■■□□□ 1.09
CLN3-264ENST00000637985 TRPA1O75762 1119 aa21.84■■□□□ 1.09
CLN3-264ENST00000637985 DLK2Q6UY11 383 aa21.84■■□□□ 1.09
CLN3-264ENST00000637985 C3orf67Q6ZVT6 689 aa21.84■■□□□ 1.09
CLN3-264ENST00000637985 CTU1Q7Z7A3 348 aaKnown RBP21.84■■□□□ 1.09
CLN3-264ENST00000637985 SUPT20HQ8NEM7 779 aa21.84■■□□□ 1.09
CLN3-264ENST00000637985 CCDC102AQ96A19 550 aa21.84■■□□□ 1.09
CLN3-264ENST00000637985 BCL2L13Q9BXK5 485 aa21.84■■□□□ 1.09
CLN3-264ENST00000637985 UBN2Q6ZU65 1347 aa21.83■■□□□ 1.09
CLN3-264ENST00000637985 TNIP1Q15025 636 aa21.83■■□□□ 1.09
CLN3-264ENST00000637985 SUSD4Q5VX71 490 aa21.83■■□□□ 1.09
CLN3-264ENST00000637985 TMX4Q9H1E5 349 aaPredicted RBP21.83■■□□□ 1.09
CLN3-264ENST00000637985 CNOT7Q9UIV1 285 aaKnown RBP21.83■■□□□ 1.09
CLN3-264ENST00000637985 MAP3K15Q6ZN16 1313 aa21.82■■□□□ 1.08
CLN3-264ENST00000637985 AKAP11Q9UKA4 1901 aa21.82■■□□□ 1.08
CLN3-264ENST00000637985 SHTN1A0MZ66 631 aa21.82■■□□□ 1.08
CLN3-264ENST00000637985 RAD17O75943 681 aa21.82■■□□□ 1.08
CLN3-264ENST00000637985 PER1O15534 1290 aaPredicted RBP21.81■■□□□ 1.08
CLN3-264ENST00000637985 GPTP24298 496 aa21.81■■□□□ 1.08
CLN3-264ENST00000637985 KIAA2012Q0VF49 1180 aa21.81■■□□□ 1.08
CLN3-264ENST00000637985 MCM10Q7L590 875 aa21.81■■□□□ 1.08
CLN3-264ENST00000637985 H7C1D1 291 aa21.8■■□□□ 1.08
CLN3-264ENST00000637985 PRKAR2BP31323 418 aa21.8■■□□□ 1.08
CLN3-264ENST00000637985 CC2D1BQ5T0F9 858 aaKnown RBP21.8■■□□□ 1.08
CLN3-264ENST00000637985 NGEFQ8N5V2 710 aa21.8■■□□□ 1.08
CLN3-264ENST00000637985 GBA2Q9HCG7 927 aaPredicted RBP21.8■■□□□ 1.08
CLN3-264ENST00000637985 HPS5Q9UPZ3 1129 aa21.8■■□□□ 1.08
CLN3-264ENST00000637985 NTSR2O95665 410 aa21.79■■□□□ 1.08
CLN3-264ENST00000637985 ZNF157P51786 506 aaPredicted RBP21.79■■□□□ 1.08
CLN3-264ENST00000637985 ZNF34Q8IZ26 560 aa21.79■■□□□ 1.08
CLN3-264ENST00000637985 C2orf69Q8N8R5 385 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms