RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 PHF14O94880 888 aa23.71■■□□□ 1.39
CLN3-258ENST00000637184 ADRA2BP18089 450 aa23.71■■□□□ 1.39
CLN3-258ENST00000637184 AMIGO3Q86WK7 504 aa23.71■■□□□ 1.39
CLN3-258ENST00000637184 KAZALD1Q96I82 304 aa23.71■■□□□ 1.39
CLN3-258ENST00000637184 BICC1Q9H694 974 aaKnown RBP23.71■■□□□ 1.39
CLN3-258ENST00000637184 DCTPP1Q9H773 170 aa23.71■■□□□ 1.39
CLN3-258ENST00000637184 SCN7AQ01118 1682 aa23.71■■□□□ 1.39
CLN3-258ENST00000637184 SRGAP3O43295 1099 aa23.7■■□□□ 1.39
CLN3-258ENST00000637184 MTX1Q13505 466 aa23.7■■□□□ 1.39
CLN3-258ENST00000637184 RTL5Q5HYW3 569 aaPredicted RBP23.7■■□□□ 1.39
CLN3-258ENST00000637184 PCCAP05165 728 aaPredicted RBP23.7■■□□□ 1.38
CLN3-258ENST00000637184 RFC4P35249 363 aa23.7■■□□□ 1.38
CLN3-258ENST00000637184 SF3B2Q13435 895 aaKnown RBP23.7■■□□□ 1.38
CLN3-258ENST00000637184 ZBTB38Q8NAP3 1195 aaPredicted RBP23.7■■□□□ 1.38
CLN3-258ENST00000637184 SSH3Q8TE77 659 aa23.7■■□□□ 1.38
CLN3-258ENST00000637184 USPL1Q5W0Q7 1092 aa23.69■■□□□ 1.38
CLN3-258ENST00000637184 UBN2Q6ZU65 1347 aa23.69■■□□□ 1.38
CLN3-258ENST00000637184 C4AP0C0L4 1744 aa23.68■■□□□ 1.38
CLN3-258ENST00000637184 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.68■■□□□ 1.38
CLN3-258ENST00000637184 SSFA2P28290 1259 aa23.68■■□□□ 1.38
CLN3-258ENST00000637184 PARP10Q53GL7 1025 aa23.68■■□□□ 1.38
CLN3-258ENST00000637184 PDZRN3Q9UPQ7 1066 aa23.68■■□□□ 1.38
CLN3-258ENST00000637184 NIP7Q9Y221 180 aaKnown RBP eCLIP23.68■■□□□ 1.38
CLN3-258ENST00000637184 FAM89AQ96GI7 184 aa23.68■■□□□ 1.38
CLN3-258ENST00000637184 SRP68Q9UHB9 627 aaKnown RBP23.68■■□□□ 1.38
CLN3-258ENST00000637184 POLA2Q14181 598 aa23.67■■□□□ 1.38
CLN3-258ENST00000637184 EPHA10Q5JZY3 1008 aa23.67■■□□□ 1.38
CLN3-258ENST00000637184 TRMT112Q9UI30 125 aaKnown RBP23.67■■□□□ 1.38
CLN3-258ENST00000637184 USP42Q9H9J4 1324 aaKnown RBP23.66■■□□□ 1.38
CLN3-258ENST00000637184 EN1Q05925 392 aaPredicted RBP23.65■■□□□ 1.38
CLN3-258ENST00000637184 ANKRD45Q5TZF3 282 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 BCL2L12Q9HB09 334 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 NUCB1Q02818 461 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 RABL6Q3YEC7 729 aaPredicted RBP23.65■■□□□ 1.38
CLN3-258ENST00000637184 SUSD4Q5VX71 490 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 SKAP1Q86WV1 359 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 CAMKK2Q96RR4 588 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 CDHR2Q9BYE9 1310 aa23.65■■□□□ 1.38
CLN3-258ENST00000637184 BAG6P46379 1132 aa23.64■■□□□ 1.37
CLN3-258ENST00000637184 EZH2Q15910 746 aaKnown RBP23.64■■□□□ 1.37
CLN3-258ENST00000637184 AKT1S1Q96B36 256 aa23.64■■□□□ 1.37
CLN3-258ENST00000637184 UTP14AQ9BVJ6 771 aaKnown RBP23.64■■□□□ 1.37
CLN3-258ENST00000637184 TFCP2L1Q9NZI6 479 aa23.64■■□□□ 1.37
CLN3-258ENST00000637184 FOXO4P98177 505 aa23.63■■□□□ 1.37
CLN3-258ENST00000637184 ZNF827Q17R98 1081 aa23.63■■□□□ 1.37
CLN3-258ENST00000637184 TBC1D9BQ66K14 1250 aa23.63■■□□□ 1.37
CLN3-258ENST00000637184 EXOC6BQ9Y2D4 811 aa23.63■■□□□ 1.37
CLN3-258ENST00000637184 FAM177BA6PVY3 158 aa23.62■■□□□ 1.37
CLN3-258ENST00000637184 LMBR1LQ6UX01 489 aa23.62■■□□□ 1.37
CLN3-258ENST00000637184 BICDL1Q6ZP65 573 aa23.62■■□□□ 1.37
CLN3-258ENST00000637184 CHD1LQ86WJ1 897 aa23.62■■□□□ 1.37
CLN3-258ENST00000637184 PLA2G12BQ9BX93 195 aa23.62■■□□□ 1.37
CLN3-258ENST00000637184 ZBTB47Q9UFB7 747 aaPredicted RBP23.62■■□□□ 1.37
CLN3-258ENST00000637184 SH3TC1Q8TE82 1336 aa23.61■■□□□ 1.37
CLN3-258ENST00000637184 IRS4O14654 1257 aaPredicted RBP23.61■■□□□ 1.37
CLN3-258ENST00000637184 SURF6O75683 361 aaKnown RBP23.61■■□□□ 1.37
CLN3-258ENST00000637184 SYNE4Q8N205 404 aa23.61■■□□□ 1.37
CLN3-258ENST00000637184 APBB1O00213 710 aa23.6■■□□□ 1.37
CLN3-258ENST00000637184 RGS3P49796 1198 aa23.6■■□□□ 1.37
CLN3-258ENST00000637184 SETDB2Q96T68 719 aa23.6■■□□□ 1.37
CLN3-258ENST00000637184 LNPKQ9C0E8 428 aa23.6■■□□□ 1.37
CLN3-258ENST00000637184 CHMP3Q9Y3E7 222 aa23.6■■□□□ 1.37
CLN3-258ENST00000637184 NTSR2O95665 410 aa23.6■■□□□ 1.37
CLN3-258ENST00000637184 HSP90AB4PQ58FF6 505 aa23.59■■□□□ 1.37
CLN3-258ENST00000637184 FLAD1Q8NFF5 587 aa23.59■■□□□ 1.37
CLN3-258ENST00000637184 NOP58Q9Y2X3 529 aaKnown RBP23.59■■□□□ 1.37
CLN3-258ENST00000637184 MYH3P11055 1940 aa23.58■■□□□ 1.37
CLN3-258ENST00000637184 CCDC125Q86Z20 511 aa23.58■■□□□ 1.37
CLN3-258ENST00000637184 TUBGCP6Q96RT7 1819 aa23.58■■□□□ 1.36
CLN3-258ENST00000637184 RAB11FIP3O75154 756 aa23.57■■□□□ 1.36
CLN3-258ENST00000637184 HSP90B1P14625 803 aaKnown RBP23.57■■□□□ 1.36
CLN3-258ENST00000637184 DEFB132Q7Z7B7 95 aa23.57■■□□□ 1.36
CLN3-258ENST00000637184 PDE8AO60658 829 aa23.57■■□□□ 1.36
CLN3-258ENST00000637184 GYS1P13807 737 aa23.56■■□□□ 1.36
CLN3-258ENST00000637184 LRRCC1Q9C099 1032 aa23.56■■□□□ 1.36
CLN3-258ENST00000637184 NYXQ9GZU5 481 aa23.56■■□□□ 1.36
CLN3-258ENST00000637184 PA2G4Q9UQ80 394 aaKnown RBP23.56■■□□□ 1.36
CLN3-258ENST00000637184 COL24A1Q17RW2 1714 aa23.56■■□□□ 1.36
CLN3-258ENST00000637184 CSF1RP07333 972 aa23.55■■□□□ 1.36
CLN3-258ENST00000637184 OS9Q13438 667 aaPredicted RBP23.55■■□□□ 1.36
CLN3-258ENST00000637184 RFX5P48382 616 aaPredicted RBP23.55■■□□□ 1.36
CLN3-258ENST00000637184 CTSWP56202 376 aa23.55■■□□□ 1.36
CLN3-258ENST00000637184 NUTM1Q86Y26 1132 aa23.55■■□□□ 1.36
CLN3-258ENST00000637184 COPRSQ9NQ92 184 aa23.55■■□□□ 1.36
CLN3-258ENST00000637184 MSH5O43196 834 aa23.54■■□□□ 1.36
CLN3-258ENST00000637184 PDE4AP27815 886 aa23.54■■□□□ 1.36
CLN3-258ENST00000637184 GTF2E1P29083 439 aaPredicted RBP23.54■■□□□ 1.36
CLN3-258ENST00000637184 G3BP1Q13283 466 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-258ENST00000637184 NBPF5PQ86XG9 351 aaPredicted RBP23.54■■□□□ 1.36
CLN3-258ENST00000637184 COL23A1Q86Y22 540 aaPredicted RBP23.54■■□□□ 1.36
CLN3-258ENST00000637184 STK32BQ9NY57 414 aa23.54■■□□□ 1.36
CLN3-258ENST00000637184 SMARCA5O60264 1052 aaPredicted RBP23.53■■□□□ 1.36
CLN3-258ENST00000637184 HCLS1P14317 486 aaPredicted RBP23.53■■□□□ 1.36
CLN3-258ENST00000637184 PTPN12Q05209 780 aaKnown RBP23.53■■□□□ 1.36
CLN3-258ENST00000637184 NFIXQ14938 502 aa23.53■■□□□ 1.36
CLN3-258ENST00000637184 CCDC57Q2TAC2 916 aa23.53■■□□□ 1.36
CLN3-258ENST00000637184 TTLL11Q8NHH1 800 aa23.53■■□□□ 1.36
CLN3-258ENST00000637184 KLHDC4Q8TBB5 520 aa23.53■■□□□ 1.36
CLN3-258ENST00000637184 BCL11AQ9H165 835 aa23.53■■□□□ 1.36
CLN3-258ENST00000637184 LAMB2P55268 1798 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms