RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 IL17REQ8NFR9 667 aa18.9■□□□□ 0.62
SNX1-214ENST00000625244 PGAP2Q9UHJ9 254 aa18.9■□□□□ 0.62
SNX1-214ENST00000625244 ZNF652Q9Y2D9 606 aa18.9■□□□□ 0.62
SNX1-214ENST00000625244 KCNQ3O43525 872 aa18.89■□□□□ 0.61
SNX1-214ENST00000625244 TEFQ10587 303 aa18.89■□□□□ 0.61
SNX1-214ENST00000625244 CC2D2BQ6DHV5 1058 aa18.89■□□□□ 0.61
SNX1-214ENST00000625244 USP16Q9Y5T5 823 aa18.89■□□□□ 0.61
SNX1-214ENST00000625244 HUNKP57058 714 aa18.88■□□□□ 0.61
SNX1-214ENST00000625244 CRY2Q49AN0 593 aa18.88■□□□□ 0.61
SNX1-214ENST00000625244 NIM1KQ8IY84 436 aa18.88■□□□□ 0.61
SNX1-214ENST00000625244 SAGE1Q9NXZ1 904 aa18.88■□□□□ 0.61
SNX1-214ENST00000625244 PRAMEF22A3QJZ6 481 aa18.87■□□□□ 0.61
SNX1-214ENST00000625244 FAM155AB1AL88 458 aaPredicted RBP18.87■□□□□ 0.61
SNX1-214ENST00000625244 HIRAP54198 1017 aaPredicted RBP18.87■□□□□ 0.61
SNX1-214ENST00000625244 GMPSP49915 693 aaPredicted RBP18.86■□□□□ 0.61
SNX1-214ENST00000625244 DLK2Q6UY11 383 aa18.86■□□□□ 0.61
SNX1-214ENST00000625244 RNF186Q9NXI6 227 aa18.86■□□□□ 0.61
SNX1-214ENST00000625244 ABCC12Q96J65 1359 aa18.85■□□□□ 0.61
SNX1-214ENST00000625244 NPC1L1Q9UHC9 1359 aa18.85■□□□□ 0.61
SNX1-214ENST00000625244 TRPA1O75762 1119 aa18.85■□□□□ 0.61
SNX1-214ENST00000625244 GTF2E1P29083 439 aaPredicted RBP18.85■□□□□ 0.61
SNX1-214ENST00000625244 CXCL9Q07325 125 aa18.85■□□□□ 0.61
SNX1-214ENST00000625244 CDC37L1Q7L3B6 337 aa18.85■□□□□ 0.61
SNX1-214ENST00000625244 TCERG1O14776 1098 aaKnown RBP18.84■□□□□ 0.61
SNX1-214ENST00000625244 PPIP5K2O43314 1243 aa18.84■□□□□ 0.61
SNX1-214ENST00000625244 KIF23Q02241 960 aaPredicted RBP18.84■□□□□ 0.61
SNX1-214ENST00000625244 HLFQ16534 295 aa18.84■□□□□ 0.61
SNX1-214ENST00000625244 AOC3Q16853 763 aa18.84■□□□□ 0.61
SNX1-214ENST00000625244 CTU1Q7Z7A3 348 aaKnown RBP18.84■□□□□ 0.61
SNX1-214ENST00000625244 TRPM4Q8TD43 1214 aa18.84■□□□□ 0.61
SNX1-214ENST00000625244 ZC3H15Q8WU90 426 aaKnown RBP18.84■□□□□ 0.61
SNX1-214ENST00000625244 HPS5Q9UPZ3 1129 aa18.84■□□□□ 0.61
SNX1-214ENST00000625244 GRIPAP1Q4V328 841 aa18.83■□□□□ 0.6
SNX1-214ENST00000625244 RGMBQ6NW40 437 aa18.83■□□□□ 0.6
SNX1-214ENST00000625244 USP48Q86UV5 1035 aa18.83■□□□□ 0.6
SNX1-214ENST00000625244 NUTM1Q86Y26 1132 aa18.83■□□□□ 0.6
SNX1-214ENST00000625244 NBPF15Q8N660 670 aa18.83■□□□□ 0.6
SNX1-214ENST00000625244 GNAT3A8MTJ3 354 aa18.82■□□□□ 0.6
SNX1-214ENST00000625244 NBPF26B4DH59 902 aa18.82■□□□□ 0.6
SNX1-214ENST00000625244 HOXA10P31260 410 aaPredicted RBP18.82■□□□□ 0.6
SNX1-214ENST00000625244 NBPF10Q6P3W6 841 aaKnown RBP18.82■□□□□ 0.6
SNX1-214ENST00000625244 GCC1Q96CN9 775 aa18.82■□□□□ 0.6
SNX1-214ENST00000625244 SIPA1L3O60292 1781 aaPredicted RBP18.81■□□□□ 0.6
SNX1-214ENST00000625244 SHTN1A0MZ66 631 aa18.81■□□□□ 0.6
SNX1-214ENST00000625244 BTBD11A6QL63 1104 aa18.81■□□□□ 0.6
SNX1-214ENST00000625244 PPEF1O14829 653 aaPredicted RBP18.81■□□□□ 0.6
SNX1-214ENST00000625244 RGL2O15211 777 aa18.81■□□□□ 0.6
SNX1-214ENST00000625244 HABP4Q5JVS0 413 aaKnown RBP18.81■□□□□ 0.6
SNX1-214ENST00000625244 RPGRQ92834 1020 aaKnown RBP18.81■□□□□ 0.6
SNX1-214ENST00000625244 ZNRF3Q9ULT6 936 aa18.81■□□□□ 0.6
SNX1-214ENST00000625244 SZT2Q5T011 3432 aa18.79■□□□□ 0.6
SNX1-214ENST00000625244 CCDC102AQ96A19 550 aa18.79■□□□□ 0.6
SNX1-214ENST00000625244 BCL2L13Q9BXK5 485 aa18.79■□□□□ 0.6
SNX1-214ENST00000625244 HTTP42858 3142 aa18.79■□□□□ 0.6
SNX1-214ENST00000625244 KIF7Q2M1P5 1343 aa18.78■□□□□ 0.6
SNX1-214ENST00000625244 CENPFP49454 3210 aa18.78■□□□□ 0.6
SNX1-214ENST00000625244 ZNF157P51786 506 aaPredicted RBP18.78■□□□□ 0.6
SNX1-214ENST00000625244 CSRNP1Q96S65 589 aa18.78■□□□□ 0.6
SNX1-214ENST00000625244 CEMIPQ8WUJ3 1361 aa18.78■□□□□ 0.6
SNX1-214ENST00000625244 A0A0C4DFX4 3053 aa18.77■□□□□ 0.6
SNX1-214ENST00000625244 DIAPH1O60610 1272 aaKnown RBP18.77■□□□□ 0.6
SNX1-214ENST00000625244 RAD17O75943 681 aa18.77■□□□□ 0.6
SNX1-214ENST00000625244 SNRPA1P09661 255 aaKnown RBP18.77■□□□□ 0.6
SNX1-214ENST00000625244 GAS2L2Q8NHY3 880 aa18.77■□□□□ 0.6
SNX1-214ENST00000625244 RBM17Q96I25 401 aaKnown RBP18.77■□□□□ 0.6
SNX1-214ENST00000625244 CRAMP1Q96RY5 1269 aa18.77■□□□□ 0.6
SNX1-214ENST00000625244 NYXQ9GZU5 481 aa18.77■□□□□ 0.6
SNX1-214ENST00000625244 VPS33BQ9H267 617 aa18.77■□□□□ 0.6
SNX1-214ENST00000625244 GBA2Q9HCG7 927 aaPredicted RBP18.77■□□□□ 0.6
SNX1-214ENST00000625244 CNOT7Q9UIV1 285 aaKnown RBP18.77■□□□□ 0.6
SNX1-214ENST00000625244 CDHR2Q9BYE9 1310 aa18.76■□□□□ 0.59
SNX1-214ENST00000625244 RIC1Q4ADV7 1423 aa18.76■□□□□ 0.59
SNX1-214ENST00000625244 C3orf67Q6ZVT6 689 aa18.76■□□□□ 0.59
SNX1-214ENST00000625244 BRCA2P51587 3418 aa18.75■□□□□ 0.59
SNX1-214ENST00000625244 C2orf69Q8N8R5 385 aa18.75■□□□□ 0.59
SNX1-214ENST00000625244 SLC10A3P09131 477 aa18.74■□□□□ 0.59
SNX1-214ENST00000625244 KRT26Q7Z3Y9 468 aa18.74■□□□□ 0.59
SNX1-214ENST00000625244 RTFDC1Q9BY42 306 aaPredicted RBP18.74■□□□□ 0.59
SNX1-214ENST00000625244 KNSTRNQ9Y448 316 aa18.74■□□□□ 0.59
SNX1-214ENST00000625244 ATP6V0A2Q9Y487 856 aa18.74■□□□□ 0.59
SNX1-214ENST00000625244 TNIP1Q15025 636 aa18.73■□□□□ 0.59
SNX1-214ENST00000625244 PKN2Q16513 984 aaKnown RBP18.73■□□□□ 0.59
SNX1-214ENST00000625244 AMER1Q5JTC6 1135 aaPredicted RBP18.73■□□□□ 0.59
SNX1-214ENST00000625244 MICALL2Q8IY33 904 aa18.73■□□□□ 0.59
SNX1-214ENST00000625244 AKAP11Q9UKA4 1901 aa18.72■□□□□ 0.59
SNX1-214ENST00000625244 ADM5C9JUS6 153 aa18.72■□□□□ 0.59
SNX1-214ENST00000625244 H7C1D1 291 aa18.72■□□□□ 0.59
SNX1-214ENST00000625244 SAMD7Q7Z3H4 446 aa18.72■□□□□ 0.59
SNX1-214ENST00000625244 UBN2Q6ZU65 1347 aa18.72■□□□□ 0.59
SNX1-214ENST00000625244 YDJCA8MPS7 323 aa18.71■□□□□ 0.59
SNX1-214ENST00000625244 EGFRP00533 1210 aa18.71■□□□□ 0.59
SNX1-214ENST00000625244 GPTP24298 496 aa18.71■□□□□ 0.59
SNX1-214ENST00000625244 SUSD4Q5VX71 490 aa18.71■□□□□ 0.59
SNX1-214ENST00000625244 SUPT20HQ8NEM7 779 aa18.71■□□□□ 0.59
SNX1-214ENST00000625244 TMX4Q9H1E5 349 aaPredicted RBP18.71■□□□□ 0.59
SNX1-214ENST00000625244 ZBTB12Q9Y330 459 aaPredicted RBP18.71■□□□□ 0.59
SNX1-214ENST00000625244 FXR1P51114 621 aaKnown RBP eCLIP18.7■□□□□ 0.58
SNX1-214ENST00000625244 KIAA2012Q0VF49 1180 aa18.7■□□□□ 0.58
SNX1-214ENST00000625244 TBC1D10BQ4KMP7 808 aaPredicted RBP18.7■□□□□ 0.58
SNX1-214ENST00000625244 NGEFQ8N5V2 710 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms