RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 MYD88Q99836 296 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 MED23Q9ULK4 1368 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 SHANK3Q9BYB0 1731 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 CSB-PGBD3P0DP91 1061 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 CLCN1P35523 988 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 CCDC173Q0VFZ6 552 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 TMEM87AQ8NBN3 555 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 MAP4K1Q92918 833 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 CHAMP1Q96JM3 812 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 TLR7Q9NYK1 1049 aaKnown RBP11.36□□□□□ -0.59
PDPN-212ENST00000621990 ABCA3Q99758 1704 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 CHRNA2Q15822 529 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 NOL8Q76FK4 1167 aaKnown RBP11.36□□□□□ -0.59
PDPN-212ENST00000621990 TMEM63CQ9P1W3 806 aa11.36□□□□□ -0.59
PDPN-212ENST00000621990 RFX7Q2KHR2 1363 aa11.35□□□□□ -0.59
PDPN-212ENST00000621990 TJP1Q07157 1748 aa11.35□□□□□ -0.59
PDPN-212ENST00000621990 KCPQ6ZWJ8 1503 aa11.35□□□□□ -0.59
PDPN-212ENST00000621990 CASTP20810 708 aaKnown RBP11.35□□□□□ -0.59
PDPN-212ENST00000621990 CASP7P55210 303 aa11.35□□□□□ -0.59
PDPN-212ENST00000621990 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.35□□□□□ -0.59
PDPN-212ENST00000621990 PLBD2Q8NHP8 589 aa11.35□□□□□ -0.59
PDPN-212ENST00000621990 NSFL1CQ9UNZ2 370 aaKnown RBP11.35□□□□□ -0.59
PDPN-212ENST00000621990 CABP4P57796 275 aa11.34□□□□□ -0.59
PDPN-212ENST00000621990 PTPN12Q05209 780 aaKnown RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 CCDC8Q9H0W5 538 aaPredicted RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 WDR17Q8IZU2 1322 aa11.34□□□□□ -0.59
PDPN-212ENST00000621990 NCLP19338 710 aaKnown RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 PRIM1P49642 420 aaKnown RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 NMIQ13287 307 aaPredicted RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 ADCK5Q3MIX3 580 aa11.34□□□□□ -0.59
PDPN-212ENST00000621990 PRPF40BQ6NWY9 871 aaKnown RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 LRSAM1Q6UWE0 723 aa11.34□□□□□ -0.59
PDPN-212ENST00000621990 ZSCAN31Q96LW9 406 aaPredicted RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 FAM227BQ96M60 508 aa11.34□□□□□ -0.59
PDPN-212ENST00000621990 SH2B1Q9NRF2 756 aaPredicted RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 COL5A2P05997 1499 aaPredicted RBP11.34□□□□□ -0.59
PDPN-212ENST00000621990 TCHHQ07283 1943 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 PCDH11XQ9BZA7 1347 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 PCDH11YQ9BZA8 1340 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 ATP5JP18859 108 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 NKX1-1Q15270 411 aaPredicted RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 CREB3L3Q68CJ9 461 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 KLHDC4Q8TBB5 520 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 JAKMIP1Q96N16 626 aaKnown RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 SIL1Q9H173 461 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 ALDH8A1Q9H2A2 487 aaPredicted RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 RBM27Q9P2N5 1060 aaKnown RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 RBM8AQ9Y5S9 174 aaKnown RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 CYP46A1Q9Y6A2 500 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 TNS2Q63HR2 1409 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 ESPNB1AK53 854 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 ZSCAN22P10073 491 aaPredicted RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 ZKSCAN1P17029 563 aaPredicted RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 ADRA2BP18089 450 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 TSGA10IPQ3SY00 556 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 FOXD4L5Q5VV16 416 aaPredicted RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 BRINP3Q76B58 766 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 FOXD4L4Q8WXT5 416 aaPredicted RBP11.33□□□□□ -0.6
PDPN-212ENST00000621990 RBSNQ9H1K0 784 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 PDRG1Q9NUG6 133 aa11.33□□□□□ -0.6
PDPN-212ENST00000621990 A0A0D9SFI3 127 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 ERVV-2B6SEH9 535 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 SOS2Q07890 1332 aaPredicted RBP11.32□□□□□ -0.6
PDPN-212ENST00000621990 STX6O43752 255 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 LARGE1O95461 756 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 SYT1P21579 422 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 TNNI3KQ59H18 835 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 PDLIM2Q96JY6 352 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 DBNLQ9UJU6 430 aaKnown RBP11.32□□□□□ -0.6
PDPN-212ENST00000621990 FPGT-TNNI3KV9GXZ4 949 aa11.32□□□□□ -0.6
PDPN-212ENST00000621990 NBPF26B4DH59 902 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 SLC27A2O14975 620 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 CPA1P15085 419 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 NBPF14Q5TI25 921 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 USPL1Q5W0Q7 1092 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 NBPF10Q6P3W6 841 aaKnown RBP11.31□□□□□ -0.6
PDPN-212ENST00000621990 UBE3BQ7Z3V4 1068 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 NBPF15Q8N660 670 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 TRIM44Q96DX7 344 aaPredicted RBP11.31□□□□□ -0.6
PDPN-212ENST00000621990 BOLA2Q9H3K6 86 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 H7C1W4 665 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 ST3GAL1Q11201 340 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 TICAM2Q86XR7 235 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 ANP32BQ92688 251 aaKnown RBP11.31□□□□□ -0.6
PDPN-212ENST00000621990 FSD1Q9BTV5 496 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 HMG20BQ9P0W2 317 aa11.31□□□□□ -0.6
PDPN-212ENST00000621990 A0A087WZG4 1122 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 PSMA5P28066 241 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 PIP4K2AP48426 406 aaPredicted RBP11.3□□□□□ -0.6
PDPN-212ENST00000621990 FOXO4P98177 505 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 USP48Q86UV5 1035 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 ZCRB1Q8TBF4 217 aaKnown RBP11.3□□□□□ -0.6
PDPN-212ENST00000621990 SMC3Q9UQE7 1217 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 STRCQ7RTU9 1775 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 SYCE3A1L190 88 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 F13A1P00488 732 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 PDIA4P13667 645 aaKnown RBP11.3□□□□□ -0.6
PDPN-212ENST00000621990 TFCP2Q12800 502 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 HS1BP3Q53T59 392 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms