RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 UTP14CQ5TAP6 766 aaKnown RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 PI4KAP1Q8N8J0 262 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 CACTINQ8WUQ7 758 aaKnown RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 TTC14Q96N46 770 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 LRRC2Q9BYS8 371 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 CCDC8Q9H0W5 538 aaPredicted RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 KIF24Q5T7B8 1368 aa8.21□□□□□ -1.09
NEDD9-216ENST00000620854 NR1I2O75469 434 aa8.21□□□□□ -1.09
NEDD9-216ENST00000620854 FMNL2Q96PY5 1086 aa8.21□□□□□ -1.09
NEDD9-216ENST00000620854 FUCA2Q9BTY2 467 aa8.21□□□□□ -1.09
NEDD9-216ENST00000620854 USP16Q9Y5T5 823 aa8.21□□□□□ -1.09
NEDD9-216ENST00000620854 USP27XA6NNY8 438 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 PES1O00541 588 aaKnown RBP8.21□□□□□ -1.1
NEDD9-216ENST00000620854 LARP1Q6PKG0 1096 aaKnown RBP8.21□□□□□ -1.1
NEDD9-216ENST00000620854 RASSF8Q8NHQ8 419 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 PI4K2BQ8TCG2 481 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 TAF6LQ9Y6J9 622 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 NDUFB9Q9Y6M9 179 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 PTPRMP28827 1452 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 CCDC144BQ3MJ40 725 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 CCDC144CPQ8IYA2 1237 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 EYA1Q99502 592 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 BOLA2Q9H3K6 86 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 ST7Q9NRC1 585 aa8.21□□□□□ -1.1
NEDD9-216ENST00000620854 AIMP1Q12904 312 aaKnown RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 ZSCAN25Q6NSZ9 544 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 CLASRPQ8N2M8 674 aaKnown RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 STAP2Q9UGK3 403 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 PPLO60437 1756 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 ZC3H13Q5T200 1668 aaKnown RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 KIF1BPQ96EK5 621 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 EDC3Q96F86 508 aaKnown RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 ARHGEF28Q8N1W1 1705 aaKnown RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 GNAT3A8MTJ3 354 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 PDE4CQ08493 712 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 TMEM87AQ8NBN3 555 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 FTOQ9C0B1 505 aaKnown RBP eCLIP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 RBM8AQ9Y5S9 174 aaKnown RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 USP32Q8NFA0 1604 aa8.2□□□□□ -1.1
NEDD9-216ENST00000620854 INO80Q9ULG1 1556 aaPredicted RBP8.2□□□□□ -1.1
NEDD9-216ENST00000620854 JAK2O60674 1132 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 KIF20AO95235 890 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 GUCY1B3Q02153 619 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 AACSQ86V21 672 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 RUFY2Q8WXA3 655 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 ZNF215Q9UL58 517 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-216ENST00000620854 IFT172Q9UG01 1749 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 CABP4P57796 275 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 ST3GAL1Q11201 340 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 CEP135Q66GS9 1140 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 KLHDC4Q8TBB5 520 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 SIRT1Q96EB6 747 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 KIDINS220Q9ULH0 1771 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 RIC3Q7Z5B4 369 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 KIAA0232Q92628 1395 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 PLEKHG1Q9ULL1 1385 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 PRR36Q9H6K5 1346 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 TOM1O60784 492 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 CLSTN1O94985 981 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 ADAMTS2O95450 1211 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 CHGBP05060 677 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 ZNF75DP51815 510 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 IL17REQ8NFR9 667 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 ANKRD7Q92527 254 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 CHPF2Q9P2E5 772 aa8.19□□□□□ -1.1
NEDD9-216ENST00000620854 METP08581 1390 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 KCNQ3O43525 872 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 TPM3P06753 285 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 SKILP12757 684 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 ELF2Q15723 593 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 AMOTQ4VCS5 1084 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 BLOC1S2Q6QNY1 142 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 HOMER1Q86YM7 354 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 SSH3Q8TE77 659 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 OGFRQ9NZT2 677 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 CTNNA3Q9UI47 895 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 NEXMIFQ5QGS0 1516 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 PTPN14Q15678 1187 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 CHRNA2Q15822 529 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 CREB3L3Q68CJ9 461 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 FSD1Q9BTV5 496 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 GLRX3O76003 335 aaKnown RBP8.18□□□□□ -1.1
NEDD9-216ENST00000620854 G3BP1Q13283 466 aaKnown RBP eCLIP8.18□□□□□ -1.11e-7■■□□□ 12.7
NEDD9-216ENST00000620854 CWF19L2Q2TBE0 894 aaKnown RBP8.18□□□□□ -1.1
NEDD9-216ENST00000620854 ISM2Q6H9L7 571 aa8.18□□□□□ -1.1
NEDD9-216ENST00000620854 EDC4Q6P2E9 1401 aaKnown RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 SMTNL1A8MU46 457 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 CTIFO43310 598 aaKnown RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 NMIQ13287 307 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 VPS53Q5VIR6 699 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 LEO1Q8WVC0 666 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 DIP2CQ9Y2E4 1556 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 CPS1P31327 1500 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 UBAP1LF5GYI3 381 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 ANKRD24Q8TF21 1146 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 ORAI2Q96SN7 254 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 BTBD11A6QL63 1104 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 CPLX1O14810 134 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 APPP05067 770 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms