RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	NARF	Q9UHQ1	456 aa		29.25	■■■□□ 2.27
CCND3-223	ENST00000616010	PPP1R42	Q7Z4L9	355 aa		29.24	■■■□□ 2.27
CCND3-223	ENST00000616010	SKAP1	Q86WV1	359 aa		29.24	■■■□□ 2.27
CCND3-223	ENST00000616010	TRAPPC3L	Q5T215	181 aa		29.23	■■■□□ 2.27
CCND3-223	ENST00000616010	SRP68	Q9UHB9	627 aa	Known RBP	29.23	■■■□□ 2.27
CCND3-223	ENST00000616010	ZPR1	O75312	459 aa		29.23	■■■□□ 2.27
CCND3-223	ENST00000616010	GCC1	Q96CN9	775 aa		29.23	■■■□□ 2.27
CCND3-223	ENST00000616010	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	29.22	■■■□□ 2.27
CCND3-223	ENST00000616010	SRGAP3	O43295	1099 aa		29.22	■■■□□ 2.27
CCND3-223	ENST00000616010	USPL1	Q5W0Q7	1092 aa		29.22	■■■□□ 2.27
CCND3-223	ENST00000616010	CLEC4G	Q6UXB4	293 aa		29.22	■■■□□ 2.27
CCND3-223	ENST00000616010	ADRA2B	P18089	450 aa		29.21	■■■□□ 2.27
CCND3-223	ENST00000616010	RFC4	P35249	363 aa		29.21	■■■□□ 2.27
CCND3-223	ENST00000616010	MTX1	Q13505	466 aa		29.21	■■■□□ 2.27
CCND3-223	ENST00000616010	EPHA10	Q5JZY3	1008 aa		29.21	■■■□□ 2.27
CCND3-223	ENST00000616010	DCTPP1	Q9H773	170 aa		29.21	■■■□□ 2.27
CCND3-223	ENST00000616010	NIP7	Q9Y221	180 aa	Known RBP eCLIP	29.21	■■■□□ 2.27
CCND3-223	ENST00000616010	USP42	Q9H9J4	1324 aa	Known RBP	29.2	■■■□□ 2.27
CCND3-223	ENST00000616010	PCCA	P05165	728 aa	Predicted RBP	29.2	■■■□□ 2.27
CCND3-223	ENST00000616010	EN1	Q05925	392 aa	Predicted RBP	29.2	■■■□□ 2.27
CCND3-223	ENST00000616010	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	29.2	■■■□□ 2.27
CCND3-223	ENST00000616010	SSH3	Q8TE77	659 aa		29.2	■■■□□ 2.27
CCND3-223	ENST00000616010	FAM89A	Q96GI7	184 aa		29.2	■■■□□ 2.27
CCND3-223	ENST00000616010	RGL2	O15211	777 aa		29.2	■■■□□ 2.26
CCND3-223	ENST00000616010	SSFA2	P28290	1259 aa		29.2	■■■□□ 2.26
CCND3-223	ENST00000616010	SF3B2	Q13435	895 aa	Known RBP	29.2	■■■□□ 2.26
CCND3-223	ENST00000616010	ZNF827	Q17R98	1081 aa		29.2	■■■□□ 2.26
CCND3-223	ENST00000616010	BCL2L12	Q9HB09	334 aa		29.2	■■■□□ 2.26
CCND3-223	ENST00000616010	PDZRN3	Q9UPQ7	1066 aa		29.2	■■■□□ 2.26
CCND3-223	ENST00000616010	TUBGCP6	Q96RT7	1819 aa		29.19	■■■□□ 2.26
CCND3-223	ENST00000616010	POLA2	Q14181	598 aa		29.18	■■■□□ 2.26
CCND3-223	ENST00000616010	EZH2	Q15910	746 aa	Known RBP	29.18	■■■□□ 2.26
CCND3-223	ENST00000616010	TRMT112	Q9UI30	125 aa	Known RBP	29.18	■■■□□ 2.26
CCND3-223	ENST00000616010	PARP10	Q53GL7	1025 aa		29.18	■■■□□ 2.26
CCND3-223	ENST00000616010	CAMKK2	Q96RR4	588 aa		29.18	■■■□□ 2.26
CCND3-223	ENST00000616010	SUSD4	Q5VX71	490 aa		29.16	■■■□□ 2.26
CCND3-223	ENST00000616010	AKT1S1	Q96B36	256 aa		29.16	■■■□□ 2.26
CCND3-223	ENST00000616010	FAM177B	A6PVY3	158 aa		29.16	■■■□□ 2.26
CCND3-223	ENST00000616010	RABL6	Q3YEC7	729 aa	Predicted RBP	29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	TBC1D9B	Q66K14	1250 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	PELP1	Q8IZL8	1130 aa	Known RBP	29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	SYNE4	Q8N205	404 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	TFCP2L1	Q9NZI6	479 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	EXOC6B	Q9Y2D4	811 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	CDHR2	Q9BYE9	1310 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	BAG6	P46379	1132 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	FOXO4	P98177	505 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	BICDL1	Q6ZP65	573 aa		29.15	■■■□□ 2.26
CCND3-223	ENST00000616010	NUCB1	Q02818	461 aa		29.14	■■■□□ 2.26
CCND3-223	ENST00000616010	ANKRD45	Q5TZF3	282 aa		29.14	■■■□□ 2.26
CCND3-223	ENST00000616010	COL24A1	Q17RW2	1714 aa		29.14	■■■□□ 2.25
CCND3-223	ENST00000616010	UTP14A	Q9BVJ6	771 aa	Known RBP	29.13	■■■□□ 2.25
CCND3-223	ENST00000616010	APBB1	O00213	710 aa		29.13	■■■□□ 2.25
CCND3-223	ENST00000616010	RGS3	P49796	1198 aa		29.12	■■■□□ 2.25
CCND3-223	ENST00000616010	LMBR1L	Q6UX01	489 aa		29.12	■■■□□ 2.25
CCND3-223	ENST00000616010	MYH3	P11055	1940 aa		29.12	■■■□□ 2.25
CCND3-223	ENST00000616010	NTSR2	O95665	410 aa		29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	DEFB132	Q7Z7B7	95 aa		29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	IRS4	O14654	1257 aa	Predicted RBP	29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	CHD1L	Q86WJ1	897 aa		29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	LNPK	Q9C0E8	428 aa		29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	CHMP3	Q9Y3E7	222 aa		29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	SH3TC1	Q8TE82	1336 aa		29.11	■■■□□ 2.25
CCND3-223	ENST00000616010	PLA2G12B	Q9BX93	195 aa		29.1	■■■□□ 2.25
CCND3-223	ENST00000616010	SURF6	O75683	361 aa	Known RBP	29.1	■■■□□ 2.25
CCND3-223	ENST00000616010	LAMB2	P55268	1798 aa		29.09	■■■□□ 2.25
CCND3-223	ENST00000616010	SETDB2	Q96T68	719 aa		29.09	■■■□□ 2.25
CCND3-223	ENST00000616010	PA2G4	Q9UQ80	394 aa	Known RBP	29.09	■■■□□ 2.25
CCND3-223	ENST00000616010	DDX60	Q8IY21	1712 aa	Known RBP	29.09	■■■□□ 2.25
CCND3-223	ENST00000616010	NUTM1	Q86Y26	1132 aa		29.08	■■■□□ 2.25
CCND3-223	ENST00000616010	GYS1	P13807	737 aa		29.07	■■■□□ 2.24
CCND3-223	ENST00000616010	ANO8	Q9HCE9	1232 aa	Predicted RBP	29.07	■■■□□ 2.24
CCND3-223	ENST00000616010	ZBTB47	Q9UFB7	747 aa	Predicted RBP	29.06	■■■□□ 2.24
CCND3-223	ENST00000616010	KLHDC4	Q8TBB5	520 aa		29.06	■■■□□ 2.24
CCND3-223	ENST00000616010	BCL11A	Q9H165	835 aa		29.06	■■■□□ 2.24
CCND3-223	ENST00000616010	PDE4A	P27815	886 aa		29.05	■■■□□ 2.24
CCND3-223	ENST00000616010	CTSW	P56202	376 aa		29.05	■■■□□ 2.24
CCND3-223	ENST00000616010	SMARCA5	O60264	1052 aa	Predicted RBP	29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	PDE8A	O60658	829 aa		29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	RFX5	P48382	616 aa	Predicted RBP	29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	COL23A1	Q86Y22	540 aa	Predicted RBP	29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	NOP58	Q9Y2X3	529 aa	Known RBP	29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	PNPLA7	Q6ZV29	1317 aa		29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	MSH5	O43196	834 aa		29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	HCLS1	P14317	486 aa	Predicted RBP	29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	CCDC85A	Q96PX6	553 aa	Predicted RBP	29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	LRRCC1	Q9C099	1032 aa		29.04	■■■□□ 2.24
CCND3-223	ENST00000616010	CARMIL3	Q8ND23	1372 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	OS9	Q13438	667 aa	Predicted RBP	29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	NFIX	Q14938	502 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	FLAD1	Q8NFF5	587 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	FAM161A	Q3B820	660 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	HSP90AB4P	Q58FF6	505 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	NBPF5P	Q86XG9	351 aa	Predicted RBP	29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	CCDC125	Q86Z20	511 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	NYX	Q9GZU5	481 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	SIL1	Q9H173	461 aa		29.03	■■■□□ 2.24
CCND3-223	ENST00000616010	RAB11FIP3	O75154	756 aa		29.02	■■■□□ 2.24
CCND3-223	ENST00000616010	STK32B	Q9NY57	414 aa		29.02	■■■□□ 2.24
CCND3-223	ENST00000616010	CSF1R	P07333	972 aa		29.01	■■■□□ 2.24

Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms