RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MAP3K5Q99683 1374 aa21.83■■□□□ 1.08
UPF1-210ENST00000600689 TYRO3Q06418 890 aa21.83■■□□□ 1.08
UPF1-210ENST00000600689 TNMDQ9H2S6 317 aa21.82■■□□□ 1.08
UPF1-210ENST00000600689 MAP3K11Q16584 847 aa21.82■■□□□ 1.08
UPF1-210ENST00000600689 PA2G4Q9UQ80 394 aaKnown RBP21.82■■□□□ 1.08
UPF1-210ENST00000600689 IP6K1Q92551 441 aa21.81■■□□□ 1.08
UPF1-210ENST00000600689 ADGRL3Q9HAR2 1447 aa21.81■■□□□ 1.08
UPF1-210ENST00000600689 TNNT1P13805 278 aa21.81■■□□□ 1.08
UPF1-210ENST00000600689 CYP46A1Q9Y6A2 500 aa21.81■■□□□ 1.08
UPF1-210ENST00000600689 MRVI1Q9Y6F6 885 aa21.81■■□□□ 1.08
UPF1-210ENST00000600689 TAF7Q15545 349 aaPredicted RBP21.8■■□□□ 1.08
UPF1-210ENST00000600689 TPD52L1Q16890 204 aaPredicted RBP21.8■■□□□ 1.08
UPF1-210ENST00000600689 BICD2Q8TD16 824 aa21.8■■□□□ 1.08
UPF1-210ENST00000600689 DDX11Q96FC9 970 aa21.8■■□□□ 1.08
UPF1-210ENST00000600689 LGR6Q9HBX8 967 aa21.8■■□□□ 1.08
UPF1-210ENST00000600689 HTATSF1O43719 755 aaKnown RBP21.8■■□□□ 1.08
UPF1-210ENST00000600689 FAM200AQ8TCP9 573 aa21.8■■□□□ 1.08
UPF1-210ENST00000600689 DNAJC25Q9H1X3 360 aa21.8■■□□□ 1.08
UPF1-210ENST00000600689 CBX8Q9HC52 389 aa21.8■■□□□ 1.08
UPF1-210ENST00000600689 ST3GAL1Q11201 340 aa21.79■■□□□ 1.08
UPF1-210ENST00000600689 ZNF142P52746 1687 aaPredicted RBP21.79■■□□□ 1.08
UPF1-210ENST00000600689 RAB11FIP3O75154 756 aa21.79■■□□□ 1.08
UPF1-210ENST00000600689 ARID5BQ14865 1188 aa21.79■■□□□ 1.08
UPF1-210ENST00000600689 TPCN1Q9ULQ1 816 aa21.79■■□□□ 1.08
UPF1-210ENST00000600689 KRT85P78386 507 aa21.78■■□□□ 1.08
UPF1-210ENST00000600689 NFAT5O94916 1531 aa21.78■■□□□ 1.08
UPF1-210ENST00000600689 NCBP1Q09161 790 aaKnown RBP21.78■■□□□ 1.08
UPF1-210ENST00000600689 UTP14CQ5TAP6 766 aaKnown RBP21.78■■□□□ 1.08
UPF1-210ENST00000600689 NPHP4O75161 1426 aaPredicted RBP21.78■■□□□ 1.08
UPF1-210ENST00000600689 KIF1BPQ96EK5 621 aa21.78■■□□□ 1.08
UPF1-210ENST00000600689 FAM227BQ96M60 508 aa21.78■■□□□ 1.08
UPF1-210ENST00000600689 USP54Q70EL1 1684 aa21.77■■□□□ 1.08
UPF1-210ENST00000600689 LRRC37A3O60309 1634 aa21.77■■□□□ 1.08
UPF1-210ENST00000600689 RGPD2P0DJD1 1756 aa21.77■■□□□ 1.08
UPF1-210ENST00000600689 SSH3Q8TE77 659 aa21.77■■□□□ 1.08
UPF1-210ENST00000600689 TRMT1Q9NXH9 659 aaKnown RBP21.77■■□□□ 1.08
UPF1-210ENST00000600689 TAF6LQ9Y6J9 622 aa21.77■■□□□ 1.08
UPF1-210ENST00000600689 ADAMTSL3P82987 1691 aa21.77■■□□□ 1.08
UPF1-210ENST00000600689 SPATA32Q96LK8 384 aa21.76■■□□□ 1.07
UPF1-210ENST00000600689 PI4KAP2A4QPH2 592 aa21.76■■□□□ 1.07
UPF1-210ENST00000600689 PI4KAP1Q8N8J0 262 aa21.76■■□□□ 1.07
UPF1-210ENST00000600689 CGNQ9P2M7 1197 aaKnown RBP21.76■■□□□ 1.07
UPF1-210ENST00000600689 SYTL4Q96C24 671 aaPredicted RBP21.76■■□□□ 1.07
UPF1-210ENST00000600689 GCP02774 474 aa21.75■■□□□ 1.07
UPF1-210ENST00000600689 KCNQ3O43525 872 aa21.75■■□□□ 1.07
UPF1-210ENST00000600689 ERCC4Q92889 916 aaPredicted RBP21.75■■□□□ 1.07
UPF1-210ENST00000600689 RBM8AQ9Y5S9 174 aaKnown RBP21.75■■□□□ 1.07
UPF1-210ENST00000600689 LARP1Q6PKG0 1096 aaKnown RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 FILIP1Q7Z7B0 1213 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 GTPBP4Q9BZE4 634 aaKnown RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 CCDC8Q9H0W5 538 aaPredicted RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 CLIP2Q9UDT6 1046 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 TAOK2Q9UL54 1235 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 CCDC9Q9Y3X0 531 aaKnown RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 IFIT2P09913 472 aaKnown RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 ZKSCAN1P17029 563 aaPredicted RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 DNAJC5Q9H3Z4 198 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 NR1I2O75469 434 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 ZNF165P49910 485 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 CCDC112Q8NEF3 446 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 CACTINQ8WUQ7 758 aaKnown RBP21.74■■□□□ 1.07
UPF1-210ENST00000600689 SIL1Q9H173 461 aa21.74■■□□□ 1.07
UPF1-210ENST00000600689 CCDC144BQ3MJ40 725 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 ZSCAN25Q6NSZ9 544 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 MPRIPQ6WCQ1 1025 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 CCDC144CPQ8IYA2 1237 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 ANKRD7Q92527 254 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 CHPF2Q9P2E5 772 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 CLASRPQ8N2M8 674 aaKnown RBP21.73■■□□□ 1.07
UPF1-210ENST00000600689 KCNH5Q8NCM2 988 aa21.73■■□□□ 1.07
UPF1-210ENST00000600689 AACSQ86V21 672 aa21.72■■□□□ 1.07
UPF1-210ENST00000600689 USP27XA6NNY8 438 aa21.72■■□□□ 1.07
UPF1-210ENST00000600689 PROSER2Q86WR7 435 aaPredicted RBP21.72■■□□□ 1.07
UPF1-210ENST00000600689 AXIN2Q9Y2T1 843 aa21.72■■□□□ 1.07
UPF1-210ENST00000600689 FAM208AQ9UK61 1670 aaKnown RBP21.72■■□□□ 1.07
UPF1-210ENST00000600689 ZBTB22O15209 634 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 VPS53Q5VIR6 699 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 RUFY2Q8WXA3 655 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 BOLA2Q9H3K6 86 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 JAK2O60674 1132 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 TPM3P06753 285 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 ZNF75DP51815 510 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 MAPK8IP2Q13387 824 aaPredicted RBP21.71■■□□□ 1.07
UPF1-210ENST00000600689 CREB3L3Q68CJ9 461 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 DDX17Q92841 729 aaKnown RBP21.71■■□□□ 1.07
UPF1-210ENST00000600689 LRRC2Q9BYS8 371 aa21.71■■□□□ 1.07
UPF1-210ENST00000600689 GLRX3O76003 335 aaKnown RBP21.7■■□□□ 1.06
UPF1-210ENST00000600689 NAP1L2Q9ULW6 460 aaPredicted RBP21.7■■□□□ 1.06
UPF1-210ENST00000600689 NMIQ13287 307 aaPredicted RBP21.7■■□□□ 1.06
UPF1-210ENST00000600689 ZNF530Q6P9A1 599 aaPredicted RBP21.7■■□□□ 1.06
UPF1-210ENST00000600689 EDC3Q96F86 508 aaKnown RBP21.7■■□□□ 1.06
UPF1-210ENST00000600689 ARHGEF25Q86VW2 580 aa21.69■■□□□ 1.06
UPF1-210ENST00000600689 NDUFB9Q9Y6M9 179 aa21.69■■□□□ 1.06
UPF1-210ENST00000600689 CEMIPQ8WUJ3 1361 aa21.69■■□□□ 1.06
UPF1-210ENST00000600689 ZSWIM6Q9HCJ5 1215 aa21.69■■□□□ 1.06
UPF1-210ENST00000600689 C9orf78Q9NZ63 289 aaPredicted RBP21.69■■□□□ 1.06
UPF1-210ENST00000600689 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.69■■□□□ 1.06
UPF1-210ENST00000600689 USP16Q9Y5T5 823 aa21.69■■□□□ 1.06
UPF1-210ENST00000600689 ERICH4A6NGS2 130 aa21.68■■□□□ 1.06
UPF1-210ENST00000600689 CTIFO43310 598 aaKnown RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms