RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 CRY2Q49AN0 593 aa23.95■■□□□ 1.42
SSBP4-207ENST00000600244 SAGE1Q9NXZ1 904 aa23.95■■□□□ 1.42
SSBP4-207ENST00000600244 NIP7Q9Y221 180 aaKnown RBP eCLIP23.95■■□□□ 1.42
SSBP4-207ENST00000600244 POLR3GLQ9BT43 218 aa23.94■■□□□ 1.42
SSBP4-207ENST00000600244 USP16Q9Y5T5 823 aa23.94■■□□□ 1.42
SSBP4-207ENST00000600244 PIP4K2AP48426 406 aaPredicted RBP23.93■■□□□ 1.42
SSBP4-207ENST00000600244 TEFQ10587 303 aa23.93■■□□□ 1.42
SSBP4-207ENST00000600244 GRIPAP1Q4V328 841 aa23.93■■□□□ 1.42
SSBP4-207ENST00000600244 FAM177BA6PVY3 158 aa23.91■■□□□ 1.42
SSBP4-207ENST00000600244 KCNQ3O43525 872 aa23.91■■□□□ 1.42
SSBP4-207ENST00000600244 NIM1KQ8IY84 436 aa23.91■■□□□ 1.42
SSBP4-207ENST00000600244 ZC3H15Q8WU90 426 aaKnown RBP23.91■■□□□ 1.42
SSBP4-207ENST00000600244 ZNF408Q9H9D4 720 aa23.91■■□□□ 1.42
SSBP4-207ENST00000600244 SIPA1L3O60292 1781 aaPredicted RBP23.91■■□□□ 1.42
SSBP4-207ENST00000600244 FAM155AB1AL88 458 aaPredicted RBP23.9■■□□□ 1.42
SSBP4-207ENST00000600244 HOXA10P31260 410 aaPredicted RBP23.9■■□□□ 1.42
SSBP4-207ENST00000600244 HIRAP54198 1017 aaPredicted RBP23.9■■□□□ 1.42
SSBP4-207ENST00000600244 CDC37L1Q7L3B6 337 aa23.9■■□□□ 1.42
SSBP4-207ENST00000600244 HUNKP57058 714 aa23.89■■□□□ 1.41
SSBP4-207ENST00000600244 CXCL9Q07325 125 aa23.88■■□□□ 1.41
SSBP4-207ENST00000600244 SLC51AQ86UW1 340 aa23.88■■□□□ 1.41
SSBP4-207ENST00000600244 RNF186Q9NXI6 227 aa23.88■■□□□ 1.41
SSBP4-207ENST00000600244 NPC1L1Q9UHC9 1359 aa23.88■■□□□ 1.41
SSBP4-207ENST00000600244 GMPSP49915 693 aaPredicted RBP23.87■■□□□ 1.41
SSBP4-207ENST00000600244 CTU1Q7Z7A3 348 aaKnown RBP23.87■■□□□ 1.41
SSBP4-207ENST00000600244 GCC1Q96CN9 775 aa23.87■■□□□ 1.41
SSBP4-207ENST00000600244 PRAMEF22A3QJZ6 481 aa23.86■■□□□ 1.41
SSBP4-207ENST00000600244 GNAT3A8MTJ3 354 aa23.86■■□□□ 1.41
SSBP4-207ENST00000600244 GTF2E1P29083 439 aaPredicted RBP23.86■■□□□ 1.41
SSBP4-207ENST00000600244 ABCC12Q96J65 1359 aa23.86■■□□□ 1.41
SSBP4-207ENST00000600244 NBPF26B4DH59 902 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 TRPA1O75762 1119 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 KIF23Q02241 960 aaPredicted RBP23.85■■□□□ 1.41
SSBP4-207ENST00000600244 HLFQ16534 295 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 RGMBQ6NW40 437 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 NBPF10Q6P3W6 841 aaKnown RBP23.85■■□□□ 1.41
SSBP4-207ENST00000600244 NBPF15Q8N660 670 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 VPS33BQ9H267 617 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 ZNRF3Q9ULT6 936 aa23.85■■□□□ 1.41
SSBP4-207ENST00000600244 KIF7Q2M1P5 1343 aa23.84■■□□□ 1.41
SSBP4-207ENST00000600244 PPIP5K2O43314 1243 aa23.84■■□□□ 1.41
SSBP4-207ENST00000600244 HPS5Q9UPZ3 1129 aa23.84■■□□□ 1.41
SSBP4-207ENST00000600244 CDHR2Q9BYE9 1310 aa23.84■■□□□ 1.41
SSBP4-207ENST00000600244 CEMIPQ8WUJ3 1361 aa23.83■■□□□ 1.41
SSBP4-207ENST00000600244 AOC3Q16853 763 aa23.83■■□□□ 1.41
SSBP4-207ENST00000600244 TRPM4Q8TD43 1214 aa23.83■■□□□ 1.41
SSBP4-207ENST00000600244 CRAMP1Q96RY5 1269 aa23.83■■□□□ 1.41
SSBP4-207ENST00000600244 BTBD11A6QL63 1104 aa23.82■■□□□ 1.4
SSBP4-207ENST00000600244 HABP4Q5JVS0 413 aaKnown RBP23.82■■□□□ 1.4
SSBP4-207ENST00000600244 DLK2Q6UY11 383 aa23.82■■□□□ 1.4
SSBP4-207ENST00000600244 USP48Q86UV5 1035 aa23.82■■□□□ 1.4
SSBP4-207ENST00000600244 NUTM1Q86Y26 1132 aa23.82■■□□□ 1.4
SSBP4-207ENST00000600244 RPGRQ92834 1020 aaKnown RBP23.82■■□□□ 1.4
SSBP4-207ENST00000600244 CCDC102AQ96A19 550 aa23.82■■□□□ 1.4
SSBP4-207ENST00000600244 RIC1Q4ADV7 1423 aa23.82■■□□□ 1.4
SSBP4-207ENST00000600244 NYXQ9GZU5 481 aa23.81■■□□□ 1.4
SSBP4-207ENST00000600244 PPEF1O14829 653 aaPredicted RBP23.8■■□□□ 1.4
SSBP4-207ENST00000600244 SNRPA1P09661 255 aaKnown RBP23.8■■□□□ 1.4
SSBP4-207ENST00000600244 GAS2L2Q8NHY3 880 aa23.8■■□□□ 1.4
SSBP4-207ENST00000600244 TCERG1O14776 1098 aaKnown RBP23.79■■□□□ 1.4
SSBP4-207ENST00000600244 DIAPH1O60610 1272 aaKnown RBP23.79■■□□□ 1.4
SSBP4-207ENST00000600244 CSRNP1Q96S65 589 aa23.79■■□□□ 1.4
SSBP4-207ENST00000600244 CLSPNQ9HAW4 1339 aa23.79■■□□□ 1.4
SSBP4-207ENST00000600244 RBM17Q96I25 401 aaKnown RBP23.78■■□□□ 1.4
SSBP4-207ENST00000600244 RTFDC1Q9BY42 306 aaPredicted RBP23.78■■□□□ 1.4
SSBP4-207ENST00000600244 PKN2Q16513 984 aaKnown RBP23.77■■□□□ 1.4
SSBP4-207ENST00000600244 BCL2L13Q9BXK5 485 aa23.77■■□□□ 1.4
SSBP4-207ENST00000600244 GBA2Q9HCG7 927 aaPredicted RBP23.77■■□□□ 1.4
SSBP4-207ENST00000600244 CNOT7Q9UIV1 285 aaKnown RBP23.77■■□□□ 1.4
SSBP4-207ENST00000600244 AKAP11Q9UKA4 1901 aa23.76■■□□□ 1.39
SSBP4-207ENST00000600244 SHTN1A0MZ66 631 aa23.76■■□□□ 1.39
SSBP4-207ENST00000600244 ZNF157P51786 506 aaPredicted RBP23.76■■□□□ 1.39
SSBP4-207ENST00000600244 AMER1Q5JTC6 1135 aaPredicted RBP23.76■■□□□ 1.39
SSBP4-207ENST00000600244 KNSTRNQ9Y448 316 aa23.76■■□□□ 1.39
SSBP4-207ENST00000600244 C2orf69Q8N8R5 385 aa23.75■■□□□ 1.39
SSBP4-207ENST00000600244 ATP6V0A2Q9Y487 856 aa23.75■■□□□ 1.39
SSBP4-207ENST00000600244 RAD17O75943 681 aa23.74■■□□□ 1.39
SSBP4-207ENST00000600244 SLC10A3P09131 477 aa23.74■■□□□ 1.39
SSBP4-207ENST00000600244 TNIP1Q15025 636 aa23.74■■□□□ 1.39
SSBP4-207ENST00000600244 C3orf67Q6ZVT6 689 aa23.73■■□□□ 1.39
SSBP4-207ENST00000600244 SUPT20HQ8NEM7 779 aa23.73■■□□□ 1.39
SSBP4-207ENST00000600244 ERVV-1B6SEH8 477 aa23.72■■□□□ 1.39
SSBP4-207ENST00000600244 H7C1D1 291 aa23.72■■□□□ 1.39
SSBP4-207ENST00000600244 KIAA2012Q0VF49 1180 aa23.72■■□□□ 1.39
SSBP4-207ENST00000600244 IBTKQ9P2D0 1353 aaPredicted RBP23.72■■□□□ 1.39
SSBP4-207ENST00000600244 KRT26Q7Z3Y9 468 aa23.71■■□□□ 1.39
SSBP4-207ENST00000600244 REM2Q8IYK8 340 aaPredicted RBP23.71■■□□□ 1.39
SSBP4-207ENST00000600244 UBN2Q6ZU65 1347 aa23.7■■□□□ 1.38
SSBP4-207ENST00000600244 SUSD4Q5VX71 490 aa23.7■■□□□ 1.38
SSBP4-207ENST00000600244 MICALL2Q8IY33 904 aa23.7■■□□□ 1.38
SSBP4-207ENST00000600244 TMX4Q9H1E5 349 aaPredicted RBP23.7■■□□□ 1.38
SSBP4-207ENST00000600244 YDJCA8MPS7 323 aa23.69■■□□□ 1.38
SSBP4-207ENST00000600244 CCER1Q8TC90 406 aaPredicted RBP23.69■■□□□ 1.38
SSBP4-207ENST00000600244 SAMD7Q7Z3H4 446 aa23.68■■□□□ 1.38
SSBP4-207ENST00000600244 DPF2Q92785 391 aa23.68■■□□□ 1.38
SSBP4-207ENST00000600244 POLR2AP24928 1970 aaKnown RBP23.68■■□□□ 1.38
SSBP4-207ENST00000600244 ADM5C9JUS6 153 aa23.67■■□□□ 1.38
SSBP4-207ENST00000600244 FXR1P51114 621 aaKnown RBP eCLIP23.67■■□□□ 1.38
SSBP4-207ENST00000600244 NUP98P52948 1817 aa23.67■■□□□ 1.38
SSBP4-207ENST00000600244 MAP3K15Q6ZN16 1313 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms