RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 ANKRD36CQ5JPF3 1778 aa23.23■■□□□ 1.31
LIG1-216ENST00000598938 RARSP54136 660 aaKnown RBP23.23■■□□□ 1.31
LIG1-216ENST00000598938 HSP90AB3PQ58FF7 597 aa23.23■■□□□ 1.31
LIG1-216ENST00000598938 NIP7Q9Y221 180 aaKnown RBP eCLIP23.23■■□□□ 1.31
LIG1-216ENST00000598938 SERPINB2P05120 415 aa23.22■■□□□ 1.31
LIG1-216ENST00000598938 TCIRG1Q13488 830 aa23.22■■□□□ 1.31
LIG1-216ENST00000598938 KSR2Q6VAB6 950 aa23.22■■□□□ 1.31
LIG1-216ENST00000598938 RIC3Q7Z5B4 369 aa23.22■■□□□ 1.31
LIG1-216ENST00000598938 SMC1BQ8NDV3 1235 aa23.21■■□□□ 1.31
LIG1-216ENST00000598938 BCL2L13Q9BXK5 485 aa23.21■■□□□ 1.31
LIG1-216ENST00000598938 SMC4Q9NTJ3 1288 aa23.21■■□□□ 1.31
LIG1-216ENST00000598938 UBN2Q6ZU65 1347 aa23.21■■□□□ 1.31
LIG1-216ENST00000598938 TIAM2Q8IVF5 1701 aa23.21■■□□□ 1.31
LIG1-216ENST00000598938 PI4KAP2A4QPH2 592 aa23.2■■□□□ 1.3
LIG1-216ENST00000598938 GPTP24298 496 aa23.2■■□□□ 1.3
LIG1-216ENST00000598938 CHRNA5P30532 468 aa23.2■■□□□ 1.3
LIG1-216ENST00000598938 BRPF1P55201 1214 aaPredicted RBP23.2■■□□□ 1.3
LIG1-216ENST00000598938 FKBP5Q13451 457 aaPredicted RBP23.2■■□□□ 1.3
LIG1-216ENST00000598938 PI4KAP1Q8N8J0 262 aa23.2■■□□□ 1.3
LIG1-216ENST00000598938 MAP3K2Q9Y2U5 619 aa23.2■■□□□ 1.3
LIG1-216ENST00000598938 ISCA1Q9BUE6 129 aa23.19■■□□□ 1.3
LIG1-216ENST00000598938 RRAGCQ9HB90 399 aa23.19■■□□□ 1.3
LIG1-216ENST00000598938 IBTKQ9P2D0 1353 aaPredicted RBP23.18■■□□□ 1.3
LIG1-216ENST00000598938 PARP10Q53GL7 1025 aa23.18■■□□□ 1.3
LIG1-216ENST00000598938 METTL22Q9BUU2 404 aaPredicted RBP23.18■■□□□ 1.3
LIG1-216ENST00000598938 CCDC88AQ3V6T2 1871 aa23.17■■□□□ 1.3
LIG1-216ENST00000598938 PTPRCP08575 1304 aa23.17■■□□□ 1.3
LIG1-216ENST00000598938 TRIM28Q13263 835 aaKnown RBP23.17■■□□□ 1.3
LIG1-216ENST00000598938 NLRP10Q86W26 655 aa23.17■■□□□ 1.3
LIG1-216ENST00000598938 LMNB1P20700 586 aa23.16■■□□□ 1.3
LIG1-216ENST00000598938 SUSD4Q5VX71 490 aa23.16■■□□□ 1.3
LIG1-216ENST00000598938 PRR5LQ6MZQ0 368 aa23.16■■□□□ 1.3
LIG1-216ENST00000598938 NBPF5PQ86XG9 351 aaPredicted RBP23.16■■□□□ 1.3
LIG1-216ENST00000598938 MYD88Q99836 296 aa23.16■■□□□ 1.3
LIG1-216ENST00000598938 ATP5J2-PTCD1G3V325 749 aa23.15■■□□□ 1.3
LIG1-216ENST00000598938 HTRA3P83110 453 aa23.15■■□□□ 1.3
LIG1-216ENST00000598938 CNBD1Q8NA66 436 aa23.15■■□□□ 1.3
LIG1-216ENST00000598938 DNAAF4Q8WXU2 420 aa23.15■■□□□ 1.3
LIG1-216ENST00000598938 NYXQ9GZU5 481 aa23.15■■□□□ 1.3
LIG1-216ENST00000598938 NTSR2O95665 410 aa23.14■■□□□ 1.29
LIG1-216ENST00000598938 TPTE2Q6XPS3 522 aa23.14■■□□□ 1.29
LIG1-216ENST00000598938 PPP1R42Q7Z4L9 355 aa23.14■■□□□ 1.29
LIG1-216ENST00000598938 DICER1Q9UPY3 1922 aaKnown RBP23.14■■□□□ 1.29
LIG1-216ENST00000598938 KIF16BQ96L93 1317 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 GLTPD2A6NH11 291 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 FAM177BA6PVY3 158 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 F6X3S4 739 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 BCAR3O75815 825 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 IGKV5-2P06315 115 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 VEGFAP15692 232 aaPredicted RBP23.13■■□□□ 1.29
LIG1-216ENST00000598938 COL13A1Q5TAT6 717 aaPredicted RBP23.13■■□□□ 1.29
LIG1-216ENST00000598938 PCNTO95613 3336 aa23.13■■□□□ 1.29
LIG1-216ENST00000598938 RNF123Q5XPI4 1314 aa23.12■■□□□ 1.29
LIG1-216ENST00000598938 NEXNQ0ZGT2 675 aa23.12■■□□□ 1.29
LIG1-216ENST00000598938 CCDC191Q8NCU4 936 aa23.12■■□□□ 1.29
LIG1-216ENST00000598938 NOB1Q9ULX3 412 aaKnown RBP23.12■■□□□ 1.29
LIG1-216ENST00000598938 ST5P78524 1137 aa23.11■■□□□ 1.29
LIG1-216ENST00000598938 RASSF7Q02833 373 aa23.11■■□□□ 1.29
LIG1-216ENST00000598938 TTLL6Q8N841 843 aa23.11■■□□□ 1.29
LIG1-216ENST00000598938 UTP14AQ9BVJ6 771 aaKnown RBP23.11■■□□□ 1.29
LIG1-216ENST00000598938 NPHP1O15259 732 aa23.1■■□□□ 1.29
LIG1-216ENST00000598938 CCDC24Q8N4L8 307 aa23.1■■□□□ 1.29
LIG1-216ENST00000598938 BRIP1Q9BX63 1249 aa23.1■■□□□ 1.29
LIG1-216ENST00000598938 ANKRD31Q8N7Z5 1873 aa23.1■■□□□ 1.29
LIG1-216ENST00000598938 RIC1Q4ADV7 1423 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 NEURL1BA8MQ27 555 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 ERFEQ4G0M1 354 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 BEND3Q5T5X7 828 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 NUTM1Q86Y26 1132 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 LINS1Q8NG48 757 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 ARHGAP45Q92619 1136 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 CWC25Q9NXE8 425 aaPredicted RBP23.09■■□□□ 1.29
LIG1-216ENST00000598938 PDZRN3Q9UPQ7 1066 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 ABCC12Q96J65 1359 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 FER1L6Q2WGJ9 1857 aa23.09■■□□□ 1.29
LIG1-216ENST00000598938 GTF2E1P29083 439 aaPredicted RBP23.08■■□□□ 1.29
LIG1-216ENST00000598938 CWF19L2Q2TBE0 894 aaKnown RBP23.08■■□□□ 1.29
LIG1-216ENST00000598938 TRMT112Q9UI30 125 aaKnown RBP23.08■■□□□ 1.29
LIG1-216ENST00000598938 API5Q9BZZ5 524 aaKnown RBP23.07■■□□□ 1.28
LIG1-216ENST00000598938 H0YIN7 160 aa23.06■■□□□ 1.28
LIG1-216ENST00000598938 SLC10A5Q5PT55 438 aa23.06■■□□□ 1.28
LIG1-216ENST00000598938 TNS4Q8IZW8 715 aa23.06■■□□□ 1.28
LIG1-216ENST00000598938 RCAN3Q9UKA8 241 aa23.06■■□□□ 1.28
LIG1-216ENST00000598938 SH3TC1Q8TE82 1336 aa23.06■■□□□ 1.28
LIG1-216ENST00000598938 KLRG2A4D1S0 409 aaPredicted RBP23.05■■□□□ 1.28
LIG1-216ENST00000598938 IPO8O15397 1037 aaKnown RBP23.05■■□□□ 1.28
LIG1-216ENST00000598938 PDE6BP35913 854 aa23.05■■□□□ 1.28
LIG1-216ENST00000598938 PRELPP51888 382 aa23.05■■□□□ 1.28
LIG1-216ENST00000598938 GCKRQ14397 625 aa23.05■■□□□ 1.28
LIG1-216ENST00000598938 SLC4A10Q6U841 1118 aa23.05■■□□□ 1.28
LIG1-216ENST00000598938 C2CD5Q86YS7 1000 aa23.05■■□□□ 1.28
LIG1-216ENST00000598938 SYNE4Q8N205 404 aa23.05■■□□□ 1.28
LIG1-216ENST00000598938 ZBTB38Q8NAP3 1195 aaPredicted RBP23.05■■□□□ 1.28
LIG1-216ENST00000598938 NFKBIEO00221 500 aa23.04■■□□□ 1.28
LIG1-216ENST00000598938 PCCAP05165 728 aaPredicted RBP23.04■■□□□ 1.28
LIG1-216ENST00000598938 DPY19L2Q6NUT2 758 aa23.04■■□□□ 1.28
LIG1-216ENST00000598938 FAM89AQ96GI7 184 aa23.04■■□□□ 1.28
LIG1-216ENST00000598938 COL11A2P13942 1736 aaPredicted RBP23.04■■□□□ 1.28
LIG1-216ENST00000598938 ALDH1L1O75891 902 aa23.03■■□□□ 1.28
LIG1-216ENST00000598938 ATF7IPQ6VMQ6 1270 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms