RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 SYNE4Q8N205 404 aa17.67■□□□□ 0.42
SHKBP1-207ENST00000595631 NYXQ9GZU5 481 aa17.67■□□□□ 0.42
SHKBP1-207ENST00000595631 BCS1LQ9Y276 419 aa17.67■□□□□ 0.42
SHKBP1-207ENST00000595631 PI4KAP2A4QPH2 592 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 H0YIN7 160 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 DDX58O95786 925 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 PDE6BP35913 854 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 PARP10Q53GL7 1025 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 KSR2Q6VAB6 950 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 PPP1R42Q7Z4L9 355 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 PI4KAP1Q8N8J0 262 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 UTP14AQ9BVJ6 771 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 CCDC88AQ3V6T2 1871 aa17.66■□□□□ 0.42
SHKBP1-207ENST00000595631 MYH3P11055 1940 aa17.65■□□□□ 0.42
SHKBP1-207ENST00000595631 FKBP5Q13451 457 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-207ENST00000595631 METTL22Q9BUU2 404 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-207ENST00000595631 BCL2L13Q9BXK5 485 aa17.65■□□□□ 0.42
SHKBP1-207ENST00000595631 PIM2Q9P1W9 311 aa17.65■□□□□ 0.42
SHKBP1-207ENST00000595631 ZBED9Q6R2W3 1325 aa17.65■□□□□ 0.42
SHKBP1-207ENST00000595631 C3orf67Q6ZVT6 689 aa17.64■□□□□ 0.41
SHKBP1-207ENST00000595631 SSH1Q8WYL5 1049 aa17.64■□□□□ 0.41
SHKBP1-207ENST00000595631 ZNF622Q969S3 477 aaKnown RBP eCLIP17.64■□□□□ 0.412e-8■□□□□ 10.5
SHKBP1-207ENST00000595631 TRMT112Q9UI30 125 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-207ENST00000595631 F6X3S4 739 aa17.63■□□□□ 0.41
SHKBP1-207ENST00000595631 RTL5Q5HYW3 569 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-207ENST00000595631 MRPL50Q8N5N7 158 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-207ENST00000595631 RIC1Q4ADV7 1423 aa17.63■□□□□ 0.41
SHKBP1-207ENST00000595631 SBF1O95248 1867 aa17.63■□□□□ 0.41
SHKBP1-207ENST00000595631 IGKV5-2P06315 115 aa17.62■□□□□ 0.41
SHKBP1-207ENST00000595631 SRGNP10124 158 aa17.62■□□□□ 0.41
SHKBP1-207ENST00000595631 DALRD3Q5D0E6 543 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-207ENST00000595631 JARID2Q92833 1246 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-207ENST00000595631 FER1L6Q2WGJ9 1857 aa17.61■□□□□ 0.41
SHKBP1-207ENST00000595631 HCLS1P14317 486 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-207ENST00000595631 CWF19L2Q2TBE0 894 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-207ENST00000595631 FAM89AQ96GI7 184 aa17.61■□□□□ 0.41
SHKBP1-207ENST00000595631 SPEF2Q9C093 1822 aa17.61■□□□□ 0.41
SHKBP1-207ENST00000595631 KLRG2A4D1S0 409 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 TRIM28Q13263 835 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 DNAAF4Q8WXU2 420 aa17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 MASTLQ96GX5 879 aa17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 ZNF219Q9P2Y4 722 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 SH3TC1Q8TE82 1336 aa17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 COL4A1P02462 1669 aa17.6■□□□□ 0.41
SHKBP1-207ENST00000595631 GOLGB1Q14789 3259 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 RNF123Q5XPI4 1314 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 GRIN3BO60391 1043 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 SLC10A5Q5PT55 438 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 STYK1Q6J9G0 422 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 TTLL6Q8N841 843 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 CCDC191Q8NCU4 936 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 SMC4Q9NTJ3 1288 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 CWC25Q9NXE8 425 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 PDZRN3Q9UPQ7 1066 aa17.59■□□□□ 0.41
SHKBP1-207ENST00000595631 NEURL1BA8MQ27 555 aa17.58■□□□□ 0.4
SHKBP1-207ENST00000595631 NPR1P16066 1061 aa17.58■□□□□ 0.4
SHKBP1-207ENST00000595631 NEXNQ0ZGT2 675 aa17.58■□□□□ 0.4
SHKBP1-207ENST00000595631 CRY2Q49AN0 593 aa17.58■□□□□ 0.4
SHKBP1-207ENST00000595631 ALDH1L2Q3SY69 923 aa17.57■□□□□ 0.4
SHKBP1-207ENST00000595631 PRPF40BQ6NWY9 871 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-207ENST00000595631 IRS4O14654 1257 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 CT47B1P0C2W7 299 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 ARHGAP27Q6ZUM4 889 aa17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 SLC51AQ86UW1 340 aa17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 ZBTB38Q8NAP3 1195 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 RPGRQ92834 1020 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 CNKSR1Q969H4 720 aa17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 NLRP3Q96P20 1036 aa17.56■□□□□ 0.4
SHKBP1-207ENST00000595631 C21orf2O43822 256 aa17.55■□□□□ 0.4
SHKBP1-207ENST00000595631 PCCAP05165 728 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-207ENST00000595631 RARSP54136 660 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-207ENST00000595631 SLC4A10Q6U841 1118 aa17.55■□□□□ 0.4
SHKBP1-207ENST00000595631 OLFM4Q6UX06 510 aa17.55■□□□□ 0.4
SHKBP1-207ENST00000595631 DICER1Q9UPY3 1922 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-207ENST00000595631 BEND3Q5T5X7 828 aa17.54■□□□□ 0.4
SHKBP1-207ENST00000595631 LINS1Q8NG48 757 aa17.54■□□□□ 0.4
SHKBP1-207ENST00000595631 TIAM2Q8IVF5 1701 aa17.54■□□□□ 0.4
SHKBP1-207ENST00000595631 PTPRCP08575 1304 aa17.53■□□□□ 0.4
SHKBP1-207ENST00000595631 HOXA10P31260 410 aaPredicted RBP17.53■□□□□ 0.4
SHKBP1-207ENST00000595631 RASSF7Q02833 373 aa17.53■□□□□ 0.4
SHKBP1-207ENST00000595631 GCKRQ14397 625 aa17.53■□□□□ 0.4
SHKBP1-207ENST00000595631 UBE3BQ7Z3V4 1068 aa17.53■□□□□ 0.4
SHKBP1-207ENST00000595631 UTRNP46939 3433 aa17.53■□□□□ 0.4
SHKBP1-207ENST00000595631 LRRC37AA6NMS7 1700 aa17.52■□□□□ 0.4
SHKBP1-207ENST00000595631 ABCC4O15439 1325 aa17.52■□□□□ 0.4
SHKBP1-207ENST00000595631 BCAR3O75815 825 aa17.52■□□□□ 0.4
SHKBP1-207ENST00000595631 RBM17Q96I25 401 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-207ENST00000595631 YTHDC1Q96MU7 727 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-207ENST00000595631 NOB1Q9ULX3 412 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-207ENST00000595631 CDHR2Q9BYE9 1310 aa17.51■□□□□ 0.39
SHKBP1-207ENST00000595631 H7C1W4 665 aa17.51■□□□□ 0.39
SHKBP1-207ENST00000595631 ALDH1B1P30837 517 aa17.51■□□□□ 0.39
SHKBP1-207ENST00000595631 CCDC85AQ96PX6 553 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-207ENST00000595631 CRAMP1Q96RY5 1269 aa17.51■□□□□ 0.39
SHKBP1-207ENST00000595631 NFKBIEO00221 500 aa17.5■□□□□ 0.39
SHKBP1-207ENST00000595631 YY1P25490 414 aa17.5■□□□□ 0.39
SHKBP1-207ENST00000595631 PRELPP51888 382 aa17.5■□□□□ 0.39
SHKBP1-207ENST00000595631 CASP7P55210 303 aa17.5■□□□□ 0.39
SHKBP1-207ENST00000595631 C7orf43Q8WVR3 580 aa17.5■□□□□ 0.39
SHKBP1-207ENST00000595631 PDE8AO60658 829 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms