RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 CIAPIN1Q6FI81 312 aa17.09■□□□□ 0.33
SCAF1-202ENST00000595242 CLEC4GQ6UXB4 293 aa17.09■□□□□ 0.33
SCAF1-202ENST00000595242 SNED1Q8TER0 1413 aa17.09■□□□□ 0.33
SCAF1-202ENST00000595242 POLR2AP24928 1970 aaKnown RBP17.08■□□□□ 0.33
SCAF1-202ENST00000595242 CELF2O95319 508 aaKnown RBP17.08■□□□□ 0.32
SCAF1-202ENST00000595242 SOX10P56693 466 aa17.08■□□□□ 0.32
SCAF1-202ENST00000595242 HHIPL1Q96JK4 782 aa17.08■□□□□ 0.32
SCAF1-202ENST00000595242 TEFQ10587 303 aa17.07■□□□□ 0.32
SCAF1-202ENST00000595242 PRPF38BQ5VTL8 546 aaKnown RBP17.07■□□□□ 0.32
SCAF1-202ENST00000595242 FMNL2Q96PY5 1086 aa17.07■□□□□ 0.32
SCAF1-202ENST00000595242 ZNF652Q9Y2D9 606 aa17.07■□□□□ 0.32
SCAF1-202ENST00000595242 PIP4K2AP48426 406 aaPredicted RBP17.06■□□□□ 0.32
SCAF1-202ENST00000595242 FAM177BA6PVY3 158 aa17.05■□□□□ 0.32
SCAF1-202ENST00000595242 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
SCAF1-202ENST00000595242 IL17REQ8NFR9 667 aa17.05■□□□□ 0.32
SCAF1-202ENST00000595242 NIP7Q9Y221 180 aaKnown RBP eCLIP17.05■□□□□ 0.32
SCAF1-202ENST00000595242 CC2D2BQ6DHV5 1058 aa17.04■□□□□ 0.32
SCAF1-202ENST00000595242 ADARB2Q9NS39 739 aaKnown RBP17.04■□□□□ 0.32
SCAF1-202ENST00000595242 NUP98P52948 1817 aa17.04■□□□□ 0.32
SCAF1-202ENST00000595242 GTF2E1P29083 439 aaPredicted RBP17.03■□□□□ 0.32
SCAF1-202ENST00000595242 ZIC5Q96T25 663 aa17.03■□□□□ 0.32
SCAF1-202ENST00000595242 GLIS2Q9BZE0 524 aaPredicted RBP17.03■□□□□ 0.32
SCAF1-202ENST00000595242 ZNF408Q9H9D4 720 aa17.03■□□□□ 0.32
SCAF1-202ENST00000595242 GPRC5DQ9NZD1 345 aa17.03■□□□□ 0.32
SCAF1-202ENST00000595242 USP16Q9Y5T5 823 aa17.03■□□□□ 0.32
SCAF1-202ENST00000595242 NOGQ13253 232 aa17.02■□□□□ 0.32
SCAF1-202ENST00000595242 GNAT3A8MTJ3 354 aa17.01■□□□□ 0.31
SCAF1-202ENST00000595242 KCNQ3O43525 872 aa17.01■□□□□ 0.31
SCAF1-202ENST00000595242 CRY2Q49AN0 593 aa17.01■□□□□ 0.31
SCAF1-202ENST00000595242 NIM1KQ8IY84 436 aa17.01■□□□□ 0.31
SCAF1-202ENST00000595242 GRIPAP1Q4V328 841 aa17■□□□□ 0.31
SCAF1-202ENST00000595242 BTBD11A6QL63 1104 aa16.99■□□□□ 0.31
SCAF1-202ENST00000595242 RGL2O15211 777 aa16.99■□□□□ 0.31
SCAF1-202ENST00000595242 PGAP2Q9UHJ9 254 aa16.99■□□□□ 0.31
SCAF1-202ENST00000595242 PRAMEF22A3QJZ6 481 aa16.98■□□□□ 0.31
SCAF1-202ENST00000595242 DIAPH1O60610 1272 aaKnown RBP16.98■□□□□ 0.31
SCAF1-202ENST00000595242 RPGRQ92834 1020 aaKnown RBP16.98■□□□□ 0.31
SCAF1-202ENST00000595242 KNSTRNQ9Y448 316 aa16.98■□□□□ 0.31
SCAF1-202ENST00000595242 TCERG1O14776 1098 aaKnown RBP16.97■□□□□ 0.31
SCAF1-202ENST00000595242 PPIP5K2O43314 1243 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 HUNKP57058 714 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 HLFQ16534 295 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 CDC37L1Q7L3B6 337 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 NUTM1Q86Y26 1132 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 SAGE1Q9NXZ1 904 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 ABCC12Q96J65 1359 aa16.97■□□□□ 0.31
SCAF1-202ENST00000595242 HOXA10P31260 410 aaPredicted RBP16.96■□□□□ 0.31
SCAF1-202ENST00000595242 GMPSP49915 693 aaPredicted RBP16.96■□□□□ 0.31
SCAF1-202ENST00000595242 CXCL9Q07325 125 aa16.96■□□□□ 0.31
SCAF1-202ENST00000595242 SLC51AQ86UW1 340 aa16.96■□□□□ 0.31
SCAF1-202ENST00000595242 GAS2L2Q8NHY3 880 aa16.96■□□□□ 0.31
SCAF1-202ENST00000595242 ZC3H15Q8WU90 426 aaKnown RBP16.96■□□□□ 0.31
SCAF1-202ENST00000595242 NPC1L1Q9UHC9 1359 aa16.96■□□□□ 0.31
SCAF1-202ENST00000595242 CEMIPQ8WUJ3 1361 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 NBPF26B4DH59 902 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 PER1O15534 1290 aaPredicted RBP16.95■□□□□ 0.3
SCAF1-202ENST00000595242 SNRPA1P09661 255 aaKnown RBP16.95■□□□□ 0.3
SCAF1-202ENST00000595242 HIRAP54198 1017 aaPredicted RBP16.95■□□□□ 0.3
SCAF1-202ENST00000595242 AOC3Q16853 763 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 NBPF10Q6P3W6 841 aaKnown RBP16.95■□□□□ 0.3
SCAF1-202ENST00000595242 NBPF15Q8N660 670 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 NYXQ9GZU5 481 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 ZNRF3Q9ULT6 936 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 GTF3C3Q9Y5Q9 886 aa16.95■□□□□ 0.3
SCAF1-202ENST00000595242 FAM155AB1AL88 458 aaPredicted RBP16.94■□□□□ 0.3
SCAF1-202ENST00000595242 PPEF1O14829 653 aaPredicted RBP16.94■□□□□ 0.3
SCAF1-202ENST00000595242 TRPA1O75762 1119 aa16.94■□□□□ 0.3
SCAF1-202ENST00000595242 RALBP1Q15311 655 aa16.94■□□□□ 0.3
SCAF1-202ENST00000595242 RNF186Q9NXI6 227 aa16.94■□□□□ 0.3
SCAF1-202ENST00000595242 KIF23Q02241 960 aaPredicted RBP16.93■□□□□ 0.3
SCAF1-202ENST00000595242 RGMBQ6NW40 437 aa16.93■□□□□ 0.3
SCAF1-202ENST00000595242 CTU1Q7Z7A3 348 aaKnown RBP16.93■□□□□ 0.3
SCAF1-202ENST00000595242 RBM17Q96I25 401 aaKnown RBP16.93■□□□□ 0.3
SCAF1-202ENST00000595242 BCL2L13Q9BXK5 485 aa16.93■□□□□ 0.3
SCAF1-202ENST00000595242 VPS33BQ9H267 617 aa16.93■□□□□ 0.3
SCAF1-202ENST00000595242 CCDC184Q52MB2 194 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 AMER1Q5JTC6 1135 aaPredicted RBP16.92■□□□□ 0.3
SCAF1-202ENST00000595242 DLK2Q6UY11 383 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 USP48Q86UV5 1035 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 CRAMP1Q96RY5 1269 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 RIC1Q4ADV7 1423 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 CDHR2Q9BYE9 1310 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 LAMB4A4D0S4 1761 aa16.92■□□□□ 0.3
SCAF1-202ENST00000595242 TRPM4Q8TD43 1214 aa16.91■□□□□ 0.3
SCAF1-202ENST00000595242 CCDC102AQ96A19 550 aa16.91■□□□□ 0.3
SCAF1-202ENST00000595242 TMX4Q9H1E5 349 aaPredicted RBP16.91■□□□□ 0.3
SCAF1-202ENST00000595242 MRS2Q9HD23 443 aa16.91■□□□□ 0.3
SCAF1-202ENST00000595242 MYBBP1AQ9BQG0 1328 aaKnown RBP16.91■□□□□ 0.3
SCAF1-202ENST00000595242 GCC1Q96CN9 775 aa16.9■□□□□ 0.3
SCAF1-202ENST00000595242 CNOT7Q9UIV1 285 aaKnown RBP16.9■□□□□ 0.3
SCAF1-202ENST00000595242 HPS5Q9UPZ3 1129 aa16.9■□□□□ 0.3
SCAF1-202ENST00000595242 U2SURPO15042 1029 aaKnown RBP16.89■□□□□ 0.29
SCAF1-202ENST00000595242 ZNF157P51786 506 aaPredicted RBP16.89■□□□□ 0.29
SCAF1-202ENST00000595242 TNIP1Q15025 636 aa16.89■□□□□ 0.29
SCAF1-202ENST00000595242 ATP6V0A2Q9Y487 856 aa16.89■□□□□ 0.29
SCAF1-202ENST00000595242 MKI67P46013 3256 aaKnown RBP16.89■□□□□ 0.29
SCAF1-202ENST00000595242 TAF1P21675 1872 aa16.88■□□□□ 0.29
SCAF1-202ENST00000595242 LAMB2P55268 1798 aa16.88■□□□□ 0.29
SCAF1-202ENST00000595242 SHTN1A0MZ66 631 aa16.88■□□□□ 0.29
SCAF1-202ENST00000595242 H7C1D1 291 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms