RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 PARP10Q53GL7 1025 aa13.68□□□□□ -0.22
USE1-204ENST00000594399 ZNF34Q8IZ26 560 aa13.68□□□□□ -0.22
USE1-204ENST00000594399 CCDC191Q8NCU4 936 aa13.68□□□□□ -0.22
USE1-204ENST00000594399 CWC25Q9NXE8 425 aaPredicted RBP13.68□□□□□ -0.22
USE1-204ENST00000594399 NIP7Q9Y221 180 aaKnown RBP eCLIP13.68□□□□□ -0.22
USE1-204ENST00000594399 DCAF8L1A6NGE4 600 aa13.67□□□□□ -0.22
USE1-204ENST00000594399 FKBP8Q14318 412 aa13.67□□□□□ -0.22
USE1-204ENST00000594399 GCKRQ14397 625 aa13.67□□□□□ -0.22
USE1-204ENST00000594399 TBC1D9BQ66K14 1250 aa13.67□□□□□ -0.22
USE1-204ENST00000594399 NLRP10Q86W26 655 aa13.67□□□□□ -0.22
USE1-204ENST00000594399 CHMP4BQ9H444 224 aaKnown RBP13.67□□□□□ -0.22
USE1-204ENST00000594399 CARMIL3Q8ND23 1372 aa13.67□□□□□ -0.22
USE1-204ENST00000594399 GRM8O00222 908 aa13.66□□□□□ -0.22
USE1-204ENST00000594399 POLD1P28340 1107 aa13.66□□□□□ -0.22
USE1-204ENST00000594399 BICDL1Q6ZP65 573 aa13.66□□□□□ -0.22
USE1-204ENST00000594399 C9orf78Q9NZ63 289 aaPredicted RBP13.66□□□□□ -0.22
USE1-204ENST00000594399 LAMB2P55268 1798 aa13.66□□□□□ -0.22
USE1-204ENST00000594399 GNAI3P08754 354 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 NFIXQ14938 502 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 NLGN1Q8N2Q7 840 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 EXOC6Q8TAG9 804 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 SETDB2Q96T68 719 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 MEIS3Q99687 375 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 SGIP1Q9BQI5 828 aa13.65□□□□□ -0.22
USE1-204ENST00000594399 ZBTB7BO15156 539 aaPredicted RBP13.64□□□□□ -0.23
USE1-204ENST00000594399 UBTFL1P0CB47 393 aaPredicted RBP13.64□□□□□ -0.23
USE1-204ENST00000594399 MSL1Q68DK7 614 aa13.64□□□□□ -0.23
USE1-204ENST00000594399 UBE3BQ7Z3V4 1068 aa13.64□□□□□ -0.23
USE1-204ENST00000594399 PPP1R42Q7Z4L9 355 aa13.64□□□□□ -0.23
USE1-204ENST00000594399 USP44Q9H0E7 712 aa13.64□□□□□ -0.23
USE1-204ENST00000594399 UTYO14607 1347 aa13.64□□□□□ -0.23
USE1-204ENST00000594399 NTSR2O95665 410 aa13.63□□□□□ -0.23
USE1-204ENST00000594399 PCCAP05165 728 aaPredicted RBP13.63□□□□□ -0.23
USE1-204ENST00000594399 NBPF7P0C2Y1 421 aaPredicted RBP13.63□□□□□ -0.23
USE1-204ENST00000594399 SUSD4Q5VX71 490 aa13.63□□□□□ -0.23
USE1-204ENST00000594399 ZBTB38Q8NAP3 1195 aaPredicted RBP13.63□□□□□ -0.23
USE1-204ENST00000594399 UTP14AQ9BVJ6 771 aaKnown RBP13.63□□□□□ -0.23
USE1-204ENST00000594399 NYXQ9GZU5 481 aa13.63□□□□□ -0.23
USE1-204ENST00000594399 TRMT112Q9UI30 125 aaKnown RBP13.63□□□□□ -0.23
USE1-204ENST00000594399 NRXN2Q9P2S2 1712 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 FAM177BA6PVY3 158 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 H7C1W4 665 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 TM4SF1P30408 202 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 DDR1Q08345 913 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 AAMPQ13685 434 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 NBPF5PQ86XG9 351 aaPredicted RBP13.62□□□□□ -0.23
USE1-204ENST00000594399 ZBTB40Q9NUA8 1239 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 HDAC5Q9UQL6 1122 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 SH3TC1Q8TE82 1336 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 CDHR2Q9BYE9 1310 aa13.62□□□□□ -0.23
USE1-204ENST00000594399 DDX60Q8IY21 1712 aaKnown RBP13.61□□□□□ -0.23
USE1-204ENST00000594399 POLRMTO00411 1230 aaKnown RBP13.61□□□□□ -0.23
USE1-204ENST00000594399 GNAI2P04899 355 aa13.61□□□□□ -0.23
USE1-204ENST00000594399 MMP10P09238 476 aa13.61□□□□□ -0.23
USE1-204ENST00000594399 CASP7P55210 303 aa13.61□□□□□ -0.23
USE1-204ENST00000594399 FAM89AQ96GI7 184 aa13.61□□□□□ -0.23
USE1-204ENST00000594399 FHDC1Q9C0D6 1143 aaPredicted RBP13.61□□□□□ -0.23
USE1-204ENST00000594399 ABCC12Q96J65 1359 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 NPHP1O15259 732 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 SERPINB2P05120 415 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 RTL5Q5HYW3 569 aaPredicted RBP13.6□□□□□ -0.23
USE1-204ENST00000594399 TPTE2Q6XPS3 522 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 CNBD1Q8NA66 436 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 SYT17Q9BSW7 474 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 C1orf115Q9H7X2 142 aa13.6□□□□□ -0.23
USE1-204ENST00000594399 LRRFIP2Q9Y608 721 aaKnown RBP13.6□□□□□ -0.23
USE1-204ENST00000594399 TNRC6CQ9HCJ0 1690 aaKnown RBP13.59□□□□□ -0.23
USE1-204ENST00000594399 RIC1Q4ADV7 1423 aa13.59□□□□□ -0.23
USE1-204ENST00000594399 IRS4O14654 1257 aaPredicted RBP13.59□□□□□ -0.23
USE1-204ENST00000594399 HSP90B1P14625 803 aaKnown RBP13.59□□□□□ -0.23
USE1-204ENST00000594399 GTF2E1P29083 439 aaPredicted RBP13.59□□□□□ -0.23
USE1-204ENST00000594399 ERICH6BQ5W0A0 696 aa13.59□□□□□ -0.23
USE1-204ENST00000594399 NUTM1Q86Y26 1132 aa13.59□□□□□ -0.23
USE1-204ENST00000594399 JARID2Q92833 1246 aaPredicted RBP13.59□□□□□ -0.23
USE1-204ENST00000594399 SUCLG2Q96I99 432 aa13.59□□□□□ -0.23
USE1-204ENST00000594399 PARP3Q9Y6F1 533 aa13.59□□□□□ -0.23
USE1-204ENST00000594399 MYH3P11055 1940 aa13.58□□□□□ -0.23
USE1-204ENST00000594399 ST5P78524 1137 aa13.58□□□□□ -0.24
USE1-204ENST00000594399 ERFEQ4G0M1 354 aa13.58□□□□□ -0.24
USE1-204ENST00000594399 PRR5LQ6MZQ0 368 aa13.58□□□□□ -0.24
USE1-204ENST00000594399 PLA2G12BQ9BX93 195 aa13.58□□□□□ -0.24
USE1-204ENST00000594399 PDE8AO60658 829 aa13.57□□□□□ -0.24
USE1-204ENST00000594399 SYNE4Q8N205 404 aa13.57□□□□□ -0.24
USE1-204ENST00000594399 KLHL34Q8N239 644 aa13.57□□□□□ -0.24
USE1-204ENST00000594399 BICC1Q9H694 974 aaKnown RBP13.57□□□□□ -0.24
USE1-204ENST00000594399 CTSWP56202 376 aa13.56□□□□□ -0.24
USE1-204ENST00000594399 KAZALD1Q96I82 304 aa13.56□□□□□ -0.24
USE1-204ENST00000594399 ANKRD31Q8N7Z5 1873 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 HCLS1P14317 486 aaPredicted RBP13.55□□□□□ -0.24
USE1-204ENST00000594399 FOXO4P98177 505 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 RABL6Q3YEC7 729 aaPredicted RBP13.55□□□□□ -0.24
USE1-204ENST00000594399 EPHA10Q5JZY3 1008 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 SLC10A5Q5PT55 438 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 CEP85Q6P2H3 762 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 ANKRD44Q8N8A2 993 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 C10orf71Q711Q0 1435 aa13.55□□□□□ -0.24
USE1-204ENST00000594399 MTX1Q13505 466 aa13.54□□□□□ -0.24
USE1-204ENST00000594399 LMBR1LQ6UX01 489 aa13.54□□□□□ -0.24
USE1-204ENST00000594399 RPAP2Q8IXW5 612 aaPredicted RBP13.54□□□□□ -0.24
USE1-204ENST00000594399 CCDC24Q8N4L8 307 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms